Individual skill

bioconductor-cageminer

This package aims to integrate GWAS-derived SNPs and coexpression networks to mine candidate genes associated with a particular phenotype. For that, users must define a set of guide genes, which are known genes involved in the studied phenotype. Additionally, the mined candidates can be given a score that favor candidates that are hubs and/or transcription factors. The scores can then be used to rank and select the top n most promising genes for downstream experiments.

skills/transcriptomics/cageminer/SKILL.md

Source commit c9bd4d8eb6edc5308a8f55e6184dce9e8afadf12

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Last checked

Nov 10, 2026

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