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bioconductor-cardelino

Methods to infer clonal tree configuration for a population of cells using single-cell RNA-seq data (scRNA-seq), and possibly other data modalities. Methods are also provided to assign cells to inferred clones and explore differences in gene expression between clones. These methods can flexibly integrate information from imperfect clonal trees inferred based on bulk exome-seq data, and sparse variant alleles expressed in scRNA-seq data. A flexible beta-binomial error model that accounts for stoc

skills/transcriptomics/cardelino/SKILL.md

Source commit c9bd4d8eb6edc5308a8f55e6184dce9e8afadf12

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Nov 10, 2026

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