Individual skill

cell-type-annotation

Generate code to assign cell type labels to single-cell RNA-seq clusters using CellTypist, SingleR, marker-based annotation, or reference label transfer (scANVI/ingest). Triggers on requests to "annotate cell types", "label clusters", "run CellTypist", "SingleR annotation", "marker gene dotplot", "transfer labels from reference atlas", "cell identity", "automated annotation", "reference mapping", "scANVI label transfer", "canonical markers", "immune cell types", "hierarchical annotation", "majority voting CellTypist", "over-clustering annotation".

skills/cell-type-annotation/SKILL.md

Source commit 4603541c396cdd845dbae554800a65132d12bb63

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Last checked

Nov 7, 2026

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