Individual skill

trajectory-analysis

Single-cell trajectory inference pipeline covering diffusion pseudotime (DPT), PAGA, RNA velocity with scVelo, and fate mapping with CellRank. Use when the user mentions pseudotime, trajectory, lineage, differentiation, RNA velocity, scVelo, CellRank, PAGA, diffusion map, fate probabilities, terminal states, spliced/unspliced, velocyto, order cells by development, cell differentiation path, cell fate, branching analysis, monocle, developmental trajectory, stem cell differentiation, progenitor to mature, how do cells differentiate, cell lineage tree, velocity arrows, fate mapping, transition probabilities, root cells, terminal states, absorption probabilities, or latent time.

skills/trajectory-analysis/SKILL.md

Source commit 4603541c396cdd845dbae554800a65132d12bb63

What was checked

Matches the observed repository HEAD

Yes

Scanner rules are current

Yes

Repository scan complete

No

Skill scan complete

No

Observed behavior

Instructions only

Last checked

Nov 11, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

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