Individual skill
batch-cohort
Use when one validated cohort analysis must be repeated across many exposure/outcome pairs. Generates one R/Python script per combination from a single methodology template, changing only the variables, and aggregates the results into a summary matrix.
skills/batch-cohort/SKILL.md
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- biostatistics Repository topic
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# Batch Cohort Analysis Skill
Generate one analysis script per exposure/outcome combination from a single validated methodology
template; only the variables change between scripts.
## Inputs
1. **Database path(s)**: CSV/SAS data files (KNHANES, NHANES, NHIS, or any cleaned cohort)
2. **Methodology template**: One of:
- Path to a validated R/Python analysis script (from /replicate-study or /cross-national)
- A paper type template name: `nhis_cohort`, `cross_national`, `survey_weighted`
- A source paper to extract methodology from (falls back to /replicate-study Phase 1)
3. **Combination spec**: A list of exposure/outcome pairs, provided as:
- Inline list: `exposures: [depression, obesity, smoking]; outcomes: [diabetes, hypertension, CVD]`