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openfold3

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Structure prediction using OpenFold3, an open-weights PyTorch reproduction of AlphaFold3 from the AlQuraishi Lab. Use this skill when predicting protein/nucleic-acid/ligand complex structures with an Apache-2.0-licensed AF3 reimplementation.

resources/skills/openfold3/SKILL.md

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Apache-2.0

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# OpenFold3 Structure Prediction

## Prerequisites

| Requirement    | Minimum | Recommended |
| -------------- | ------- | ----------- |
| Python         | 3.10+   | 3.11        |
| CUDA           | 12.1+   | 12.4+       |
| GPU VRAM       | 24GB    | 80GB (H100) |
| RAM            | 32GB    | 64GB        |
| Disk (weights) | 3GB     | -           |

## How to run