Individual skill
model-calibration-curve
Use when assessing how well a survival model's predicted probabilities agree with observed outcomes by fitting a Cox model and generating bootstrap calibration curves at one or more prediction horizons from a clinical CSV file. NOT for: nomogram construction, univariate Cox screening, ROC analysis, or decision-curve analysis.
awesome-med-research-skills/Data Analysis/model-calibration-curve/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 2,043
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- engineering Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 bytesSKILL.mdcore · 10,820 byteseval_report_model-calibration-curve_result.jsonasset · 13,489 bytesreferences/algorithm.mddoc · 3,108 bytesreferences/cli-guide.mddoc · 2,193 bytesreferences/troubleshooting.mddoc · 2,736 bytesscripts/functions.Rasset · 5,495 bytesscripts/main.Rruns · 4,673 bytesscripts/run_analysis.Rasset · 4,603 bytesscripts/utils.Rasset · 4,510 bytestests/data/sample_clinical_survival_data.csvasset · 43,139 bytestests/run_smoke_test.Rruns · 1,904 bytestests/run_smoke_test.shruns · 127 bytes
Read excerpt
# Model Calibration Curve
## When to Use
Use this skill when you need to:
- validate a survival model with bootstrap calibration curves;
- compare predicted and observed survival probabilities at multiple horizons;
- export calibration statistics together with a PDF visualization.
Typical user requests:
- "Generate 1-, 2-, and 3-year calibration curves for this prognosis model."
- "Check whether the Cox model built from age, gender, and risk is well calibrated."
- "Export calibration statistics and a calibration PDF from this clinical cohort."
