Individual skill
hierarchical-clustering-plot
Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample similarity assessment. Trigger keywords: hierarchical clustering, dendrogram, sample QC, batch inspection, sample similarity. NOT for: differential expression testing, gene clustering heatmaps, single-cell clustering workflows.
awesome-med-research-skills/Data Analysis/hierarchical-clustering-plot/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 2,046
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- testing Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
DESCRIPTIONasset · 378 bytesSKILL.mdcore · 12,455 bytesSKILL.mdcore · 12,455 bytesSKILL.mdcore · 12,455 bytesSKILL.mdcore · 12,455 bytesSKILL.mdcore · 12,455 bytesSKILL.mdcore · 12,455 bytesSKILL.mdcore · 12,455 bytesSKILL.mdcore · 12,455 byteseval_report_hierarchical-clustering-plot_result.jsonasset · 12,214 bytesreferences/algorithm.mddoc · 2,548 bytesreferences/cli-guide.mddoc · 4,659 bytesreferences/troubleshooting.mddoc · 5,574 bytesscripts/clustering_functions.Rasset · 1,220 bytesscripts/input_functions.Rasset · 4,201 bytesscripts/logging_utils.Rasset · 1,028 bytesscripts/main.Rruns · 3,848 bytesscripts/output_utils.Rasset · 1,330 bytesscripts/run_analysis.Rasset · 3,797 bytesscripts/runtime_utils.Rasset · 1,676 bytesscripts/validation_utils.Rasset · 1,838 bytestests/data/sample_expression_matrix.csvasset · 10,458 bytestests/data/sample_groups.csvasset · 653 bytestests/run_tests.Rruns · 1,447 bytestests/testthat/test-clustering.Rasset · 6,214 bytes
Read excerpt
# Hierarchical Clustering Plot
## When to Use
Use this skill when you need a sample-level hierarchical clustering dendrogram from a bulk expression matrix and a sample annotation table.
- Good fits: sample QC, batch inspection, sample similarity assessment, checking whether annotated sample groups cluster as expected.
- Trigger keywords: hierarchical clustering, dendrogram, sample QC, batch inspection, sample similarity.
- Not for: differential expression testing, gene clustering heatmaps, single-cell clustering workflows.
## When to Read External Files
| Situation | File to Read | Purpose |
|-----------|--------------|---------|