Individual skill
arxiv-preflight
Run a submission-readiness preflight on a manuscript before arXiv upload. Use when the user is preparing an arXiv submission, asks to check a paper before uploading, mentions hallucinated or fake references, leftover LLM meta-comments / prompts in text, placeholder data (TODO, TBD, XX%), AI-use disclosure, scholarly integrity, research integrity, or arXiv moderation risk — even if they don't say "preflight". Also trigger on phrases like "check my paper before arXiv", "verify my references", "scan for AI artifacts", "scan for LLM residue", "is my submission ready", or "review .tex/.bib before submit".
awesome-med-research-skills/Academic Writing/arxiv-preflight/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 2,042
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- research Derived category
Files and excerpt
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Browse files
SKILL.mdcore · 7,411 bytesSKILL.mdcore · 7,411 byteseval_report_arxiv-preflight_result.jsonasset · 13,212 bytesevals/evals.jsonasset · 3,783 bytesevals/fixtures/clean/main.texasset · 1,575 bytesevals/fixtures/clean/refs.bibasset · 317 bytesevals/fixtures/hallucinated_ref/main.texasset · 869 bytesevals/fixtures/hallucinated_ref/refs.bibasset · 1,581 bytesevals/fixtures/llm_meta/main.texasset · 1,092 bytesevals/fixtures/llm_meta/refs.bibasset · 269 bytesevals/fixtures/multifile/intro.texasset · 159 bytesevals/fixtures/multifile/main.texasset · 223 bytesevals/fixtures/multifile/method.texasset · 87 bytesevals/fixtures/multifile/refs.bibasset · 266 bytesevals/fixtures/multifile/results.texasset · 105 bytesreferences/ai_artifact_patterns.mddoc · 6,921 bytesreferences/arxiv_policy_notes.mddoc · 4,308 bytesreferences/reference_verification.mddoc · 5,005 bytesreferences/report_template.mddoc · 3,780 bytesscripts/extract_manuscript_text.pyruns · 11,219 bytesscripts/generate_preflight_report.pyruns · 16,214 bytesscripts/scan_ai_artifacts.pyruns · 11,227 bytesscripts/verify_references.pyruns · 20,121 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# arXiv Preflight
Submission-readiness review for a manuscript before arXiv upload. The goal is **not** to judge whether a paper was AI-written from style. The goal is to find concrete, locatable, reviewable evidence of unchecked LLM output, hallucinated references, placeholder data, unsupported claims, and arXiv-policy risks — and to hand the author a fix list.
Anchor on the actual arXiv stance: authors may use generative AI tools but are fully responsible for the content and must disclose significant use per field norms; AI tools cannot be listed as authors. See `references/arxiv_policy_notes.md` for the exact language.
This skill is intentionally platform-neutral. It should work for any AI coding/review agent that can read files and run local Python scripts; it does not require OpenAI-specific UI metadata.
Requires Python 3.9+.
## Workflow
1. **Identify inputs.** Ask for or detect: LaTeX project directory, single PDF, BibTeX file, supplementary figures/tables, or experiment data. Prefer LaTeX source over rendered PDF — PDF text extraction loses structure and produces noisier reference checks.