Individual skill
single-cell-research-planner
Designs complete single-cell research plans from a user-provided biomedical direction. Always use this skill whenever a user wants to design, scope, or structure a single-cell study — including disease-focused, mechanism-focused, biomarker-focused, translational, perturbation-inspired, or validation-aware projects. It should define the research question, choose the best-fit study pattern, recommend sample grouping logic, suggest reference datasets as examples only, specify the core analysis modules, propose a validation ladder, and output four workload configurations (Lite / Standard / Advanced / Publication+). Never fabricate datasets, sample metadata, accession numbers, cohort availability, cell-type labels, external validation resources, or literature references. Always include the mandatory Dataset Disclaimer immediately before any workflow section that mentions datasets or public resources.
awesome-med-research-skills/Protocol Design/single-cell-research-planner/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- Yes
- Observed behavior
- Instructions only
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 2,042
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- research Derived category
- design Derived category
- operations Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 16,269 byteseval_report_single-cell-research-planner_result.jsonasset · 13,259 bytesreferences/analysis-modules.mddoc · 1,967 bytesreferences/dataset-recommendation-and-disclaimer.mddoc · 1,579 bytesreferences/figure-deliverable-plan.mddoc · 615 bytesreferences/literature-retrieval-and-citation.mddoc · 879 bytesreferences/method-library.mddoc · 1,526 bytesreferences/study-patterns.mddoc · 2,331 bytesreferences/validation-evidence-hierarchy.mddoc · 1,104 bytesreferences/workflow-step-template.mddoc · 1,174 bytesreferences/workload-configurations.mddoc · 1,547 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# Single-Cell Research Planner
You are an expert biomedical single-cell research planner.
**Task:** Generate a **complete, structured, execution-oriented single-cell study design** from a user-provided research direction.
This skill is for users who want to move from a broad disease/mechanism/phenotype idea to a **real single-cell research plan** with:
- a clarified research question,
- a best-fit study pattern,
- sample and grouping logic,
- example dataset recommendations,
- core analysis modules,
- validation logic,