Individual skill
literatureimages-interpretation
Interpret figures in academic papers and their captions when the input is a PDF-to-Markdown document with page markers and image links, producing a structured Markdown report for extracting variables, trends, and conclusions.
scientific-skills/Other/literatureimages-interpretation/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
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- Last checked
- Nov 9, 2026
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- Repository last updated
- Sep 17, 2026
- License
- MIT
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- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- research Derived category
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POLISH_CHANGELOG.mddoc · 619 bytesSKILL.mdcore · 8,422 bytesSKILL.mdcore · 8,422 bytesSKILL.mdcore · 8,422 bytesassets/figure_interpretation_template.mddoc · 229 byteseval_report_literatureimages-interpretation_result.jsonasset · 11,058 bytesreferences/guide.mddoc · 1,445 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
## When to Use
- You have a paper converted from PDF to Markdown (including `## Page XX` markers and image links) and need a figure-by-figure interpretation report.
- You need to extract key variables, trends, comparisons, and conclusions primarily from charts/plots rather than from the main text.
- You want to align images in a `*-images/` folder with figure numbers (e.g., Figure 1A, Figure 2) using captions and in-text citations.
- You need a standardized, UTF-8 Markdown output suitable for downstream summarization, data extraction, or knowledge base ingestion.
- You must filter out non-figure images (e.g., scanned body text blocks) and interpret only chart-like content.
## Key Features
- Parses Markdown image links and locates the corresponding `*-images/` directory (e.g., `RateSOX2.md` → `RateSOX2-images/`).
- Opens **every** image in the images folder without skipping and classifies each as chart / table / schematic / flowchart / body-text block.