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Classifies and organizes literature by theme, method, and conclusion; use when you need to batch-read a folder of PDF/MD/DOCX/TXT files and output a structured CSV for literature reviews and annotation management.

scientific-skills/Other/bibliography/SKILL.md

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> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)

# Bibliography

## When to Use

- You are conducting a literature review and need consistent summaries plus structured metadata (theme/method/conclusion) across many papers.
- You have a mixed-format reading folder (`.pdf`, `.md`, `.docx`, `.txt`) and want a single CSV for downstream analysis (e.g., Excel, R, Python).
- You need to organize annotations by **keywords (theme)**, **experimental methods (method)**, and **key conclusions (conclusion)**.
- You want a two-step pipeline: first generate a human-readable summary Markdown, then generate a machine-friendly CSV from that Markdown.
- You need robust handling of PDFs by converting them to Markdown first (via `pdf-extract`) and then using **only Markdown content** for extraction.

## Key Features

- Batch scans an input directory for `.pdf`, `.md`, `.docx`, and `.txt` literature files.
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