Individual skill
encode-api
Access the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.). Use this skill when the user needs to query ENCODE data, search by keywords, or retrieve specific objects by accession ID.
scientific-skills/Evidence Insight/encode-api/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
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- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 2,042
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- data Derived category
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SKILL.mdcore · 5,743 bytesSKILL.mdcore · 5,743 bytesSKILL.mdcore · 5,743 bytesSKILL.mdcore · 5,743 bytesSKILL.mdcore · 5,743 bytesSKILL.mdcore · 5,743 bytesSKILL.mdcore · 5,743 bytesSKILL.mdcore · 5,743 bytesencode-api_audit_result_v2.jsonasset · 12,714 bytesrequirements.txtdoc · 9 bytesscripts/encode_client.pyruns · 3,078 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# ENCODE API Skill
This skill allows you to interact with the ENCODE Project database via its REST API.
## When to Use
- Use this skill when the request matches its documented task boundary.
- Use it when the user can provide the required inputs and expects a structured deliverable.
- Prefer this skill for repeatable, checklist-driven execution rather than open-ended brainstorming.
## Key Features
- Scope-focused workflow aligned to: Access the ENCODE Project REST API to search for and retrieve biological data (biosamples, experiments, etc.). Use this skill when the user needs to query ENCODE data, search by keywords, or retrieve specific objects by accession ID.