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gget

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Unified CLI/Python interface for querying genomic, proteomic, structure, and expression data across 20+ bioinformatics databases; use when you need fast, scriptable retrieval by gene/protein IDs or keywords.

scientific-skills/Evidence Insight/gget/SKILL.md

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> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)

## When to Use

- You need to search genes/proteins by keyword and species across common databases (e.g., Ensembl/UniProt/NCBI).
- You want to fetch detailed metadata for one or many Ensembl/UniProt/NCBI identifiers.
- You need to retrieve nucleotide/protein sequences for downstream analysis or pipelines.
- You want to obtain or predict protein structures (PDB download or AlphaFold prediction) from a sequence.
- You need to query expression resources (e.g., ARCHS4, CELLxGENE, Bgee) or run enrichment analysis (Enrichr).

## Key Features

- Unified wrapper (`scripts/wrapper.py`) exposing multiple `gget` subcommands through a consistent interface.
- Gene/protein search and identifier resolution across multiple databases.
- Rich gene/protein information retrieval (annotations and metadata).
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