Individual skill

bioinfo-analysis-plan

Bioinformatics literature analysis workflow extraction and customized plan design. Triggered only when the user explicitly refers to a specific paper: the user requests extracting analysis pipelines from a paper, summarizing technical workflows, reproducing analysis approaches...

scientific-skills/Protocol Design/bioinfo-analysis-plan/SKILL.md

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Last checked: Nov 9, 2026

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Repository stars (not skill ratings): 2,042
Repository last updated: Sep 17, 2026
License: MIT

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bioinformatics Repository topic
computational-biology Repository topic
data-analysis Repository topic
ai Repository topic
biology Repository topic
cancer-genomics Repository topic
data-visualization Repository topic
differential-expression Repository topic
genomics Repository topic
medical Repository topic
research Derived category
design Derived category
operations Derived category

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> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)


# Bioinformatics Analysis Workflow Extraction and Plan Design Skill

## Core Task

The core objectives of this skill are:
1. **Systematically extract** the complete analysis workflow of a bioinformatics paper (at the macro pipeline level)
2. **Design customized** analysis plans for new diseases/phenotypes

## Workflow

### Step 1: Confirm Literature Source