Individual skill
time-dependent-roc
Use when performing time-dependent ROC curve analysis for survival data with follow-up time, event status, and a numeric marker. Supports CSV/TXT/TSV/Excel input, `risk_score` as the default marker unless `--marker_col` is provided, parameter validation, standardized output directories, AUC table export, ROC point export, and PDF figure generation.
awesome-med-research-skills/Data Analysis/time-dependent-roc/SKILL.md
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- Last checked
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- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- data Derived category
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SKILL.mdcore · 6,009 bytesSKILL.mdcore · 6,009 bytesSKILL.mdcore · 6,009 bytesSKILL.mdcore · 6,009 bytesSKILL.mdcore · 6,009 bytesSKILL.mdcore · 6,009 byteseval_report_time-dependent-roc_result.jsonasset · 15,764 bytesreferences/algorithm.mddoc · 2,781 bytesreferences/cli-guide.mddoc · 3,437 bytesreferences/troubleshooting.mddoc · 4,408 bytesscripts/functions.Rasset · 9,201 bytesscripts/main.Rruns · 6,690 bytesscripts/run_analysis.Rasset · 1,934 bytesscripts/utils.Rasset · 5,047 bytestests/data/time_roc_sample1.txtdoc · 16,119 bytestests/data/time_roc_sample2.txtdoc · 5,581 bytestests/data/time_roc_sample3.txtdoc · 21,648 bytes
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> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# Time-Dependent ROC Analysis
Use this skill to compute and plot time-dependent ROC curves for survival outcomes.
## Use This Skill When
- You have survival data with `futime` and `fustat` columns.
- You need time-specific ROC curves and AUC values for a numeric risk marker.
- You want a command-line workflow with parameter validation and standardized outputs.
- Your file contains a numeric marker column named `risk_score`, or you will provide another marker explicitly with `--marker_col`.
## Primary Command
