Individual skill
gokegg-analysis
Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart. NOT for single-cell RNA-seq, methylation data, or non-expression data.
awesome-med-research-skills/Data Analysis/gokegg/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- Yes
- Observed behavior
- Not checked yet
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 2,043
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- engineering Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 10,778 bytesassets/KEGG_pathway_name.txtdoc · 81,701 byteseval_report_gokegg_result.jsonasset · 14,409 bytesreferences/algorithm.mddoc · 5,093 bytesreferences/cli-guide.mddoc · 4,357 bytesreferences/troubleshooting.mddoc · 5,919 bytesscripts/dochart.Rruns · 4,620 bytesscripts/functions.Rasset · 6,017 bytesscripts/main.Rruns · 7,496 bytesscripts/run_analysis.Rasset · 3,596 bytesscripts/utils.Rasset · 6,812 bytestest/data/gene.txtdoc · 19 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
## When To Read External Files
| Situation | File To Read | Purpose |
|---|---|---|
| Need algorithm details | `references/algorithm.md` | Statistical methods and formulas |
| Need to run the analysis | `scripts/main.R` | Full execution command |
| Encounter an error | `references/troubleshooting.md` | Troubleshooting guidance |
| Need CLI examples | `references/cli-guide.md` | Parameter usage examples |
## When To Use
Use this skill for:
- GO and KEGG enrichment from a gene list derived from bulk RNA-seq or microarray studies