Individual skill
deeptools
NGS analysis toolkit. Used for BAM to bigWig conversion, quality control (correlation, PCA, fingerprint plots), heatmaps/feature plots (TSS, peaks), suitable for ChIP-seq, RNA-seq, ATAC-seq visualization.
scientific-skills/Data Analysis/deeptools/SKILL.md
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> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# deepTools: NGS Data Analysis Toolkit
## When to Use
- Use this skill when you need ngs analysis toolkit. used for bam to bigwig conversion, quality control (correlation, pca, fingerprint plots), heatmaps/feature plots (tss, peaks), suitable for chip-seq, rna-seq, atac-seq visualization in a reproducible workflow.
- Use this skill when a data analytics task needs a packaged method instead of ad-hoc freeform output.
- Use this skill when the user expects a concrete deliverable, validation step, or file-based result.
- Use this skill when `scripts/validate_files.py` is the most direct path to complete the request.
- Use this skill when you need the `deeptools` package behavior rather than a generic answer.
## Key Features
- Scope-focused workflow aligned to: NGS analysis toolkit. Used for BAM to bigWig conversion, quality control (correlation, PCA, fingerprint plots), heatmaps/feature plots (TSS, peaks), suitable for ChIP-seq, RNA-seq, ATAC-seq visualization.