Individual skill
experiment-detail-comparator
Compare experimental method details between two Zotero PDF papers, identify protocol differences (ratios, dosages, timing, conditions), search supporting literature to explain why they differ, and generate an HTML report. Use when you need a parameter-level comparison of two methods and evidence-backed reasons for discrepancies.
scientific-skills/Other/experiment-detail-comparator/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 2,047
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- research Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
README.mddoc · 8,616 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesSKILL.mdcore · 13,207 bytesexperiment-detail-comparator_audit_result_v1.jsonasset · 12,373 bytesrun_comparison.pyruns · 17,320 bytesscripts/compare_methods.pyruns · 12,799 bytesscripts/convert_pdf_to_markdown.pyruns · 3,178 bytesscripts/download_full_pdf.pyruns · 11,453 bytesscripts/experiment_classifier.pyruns · 12,758 bytesscripts/extract_method_section.pyruns · 32,649 bytesscripts/extract_pdf_tables.pyruns · 7,628 bytesscripts/generate_html_report.pyruns · 20,099 bytesscripts/get_zotero_pdf.pyruns · 6,817 bytesscripts/search_explanations.pyruns · 18,433 bytesscripts/validate_skill.pyruns · 679 bytestemp/comparison_simple.jsonasset · 3,414 bytestemp/liver_fibrosis_comparison.jsonasset · 3,815 bytestemp/lung_injury_comparison.jsonasset · 0 bytestemp/mcm7_method.jsonasset · 31,474 bytestemp/mcm7_methods_only.mddoc · 6,056 bytestemp/mcm7_paper.mddoc · 79,869 bytestemp/mesenchymal_paper.mddoc · 60,708 bytestemp/myd88_method.jsonasset · 116,389 bytestemp/myd88_methods_only.mddoc · 20,116 bytestemp/myd88_paper.mddoc · 53,724 bytestemp/paper1.mddoc · 69,483 bytestemp/paper1_method.jsonasset · 355,898 bytestemp/paper1_method_final.jsonasset · 34,820 bytestemp/paper1_method_v2.jsonasset · 34,820 bytestemp/paper1_methods_only.mddoc · 6,627 bytestemp/paper2.mddoc · 51,427 bytestemp/paper2_method.jsonasset · 263,792 bytestemp/paper2_method_final.jsonasset · 35,408 bytestemp/paper2_method_v2.jsonasset · 8,582 bytestemp/paper2_methods_extracted.mddoc · 6,736 bytestemp/paper2_methods_only.mddoc · 1,715 bytestemp/paper2_methods_pattern1.txtdoc · 1,715 bytestemp/stat6_paper.mddoc · 57,889 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
## Validation Shortcut
Run this minimal command first to verify the supported execution path:
```bash
python scripts/compare_methods.py --help
```
# Experiment Detail Comparator
## When to Use
Use this skill when you need to: