Individual skill
clinical-data-cleaner
Use when cleaning clinical trial data, preparing data for FDA/EMA submission, standardizing SDTM datasets, handling missing values in clinical studies, detecting outliers in lab results, or converting raw CRF data to CDISC format. Cleans and standardizes clinical trial data fo...
scientific-skills/Data Analysis/clinical-data-cleaner/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
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- Observed behavior
- Local scripts
- Last checked
- Nov 9, 2026
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- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- data Derived category
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POLISH_CHANGELOG.mddoc · 615 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 bytesSKILL.mdcore · 9,736 byteseval_report_clinical-data-cleaner_result.jsonasset · 10,984 bytesreferences/common-patterns.mddoc · 8,063 bytesreferences/domain_specs.jsonasset · 2,760 bytesreferences/outlier_thresholds.jsonasset · 3,895 bytesreferences/sdtm_ig_guide.mddoc · 1,819 bytesreferences/troubleshooting.mddoc · 2,049 bytesscripts/main.pyruns · 16,197 bytes
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> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# Clinical Data Cleaner
Clean, validate, and standardize clinical trial data to meet CDISC SDTM standards for regulatory submissions to FDA or EMA.
## Quick Check
Use this command to verify that the packaged script entry point can be parsed before deeper execution.
```bash
python -m py_compile scripts/main.py
```
## Audit-Ready Commands