Individual skill
find-paper-references
Automatically find references for academic paper Markdown files. Reads full paper text, identifies each knowledge point requiring citation (epidemiological data, mechanism descriptions, existing research conclusions, etc.), searches PubMed for 3-5 most relevant articles per kn...
scientific-skills/Academic Writing/find-paper-references/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
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- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 2,042
- Repository last updated
- Sep 17, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- research Derived category
- data Derived category
Files and excerpt
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Browse files
POLISH_CHANGELOG.mddoc · 695 bytesSKILL.mdcore · 13,394 bytesSKILL.mdcore · 13,394 bytesSKILL.mdcore · 13,394 bytesSKILL.mdcore · 13,394 bytes_user_meta.jsonasset · 95 byteseval_report_find-paper-references_result.jsonasset · 10,505 bytesscripts/batch_search.pyruns · 13,019 bytesscripts/convert_to_docx.pyruns · 4,509 bytesscripts/remap_refs.pyruns · 10,939 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# find-paper-references — Academic Paper PubMed Reference Finder
## Tools
Scripts are located in the `scripts/` subdirectory of this skill:
- `batch_search.py` — **Main entry point**: accepts all queries at once, parallel search, batch esummary fetch, typical runtime 10-20s
- `remap_refs.py` — Converts `[PMID:XXXXXXXX]` markers to `[1][2]` numbering and generates formal references (**not called by this skill — handled by subsequent endnote/zotero skill**)
- `convert_to_docx.py` — Converts `.md` to `.docx` (**not called by this skill**)
### Skill Boundary
