Individual skill
pdf-extract-experimental-materials
Extract experimental materials and instrument information from PDFs (or PDF-derived text/Markdown) into three CSV tables; use when a paper/report contains sections like Materials and Methods, Key Resources Table, Reagents, Antibodies, Consumables, Software, Equipment, Instruments, or Reagent Preparation.
scientific-skills/Evidence Insight/pdf-extract-experimental-materials/SKILL.md
Source commit 686e09dfdb45d9fa1a08664f06bb93769b3c9d91
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- Last checked
- Nov 9, 2026
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- Repository last updated
- Sep 17, 2026
- License
- MIT
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SKILL.mdcore · 8,030 bytesSKILL.mdcore · 8,030 bytesSKILL.mdcore · 8,030 bytesSKILL.mdcore · 8,030 bytesSKILL.mdcore · 8,030 bytesSKILL.mdcore · 8,030 bytespdf-extract-experimental-materials_audit_result_v2.jsonasset · 12,258 bytesscripts/validate_skill.pyruns · 679 bytes
Read excerpt
> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
## Validation Shortcut
Run this minimal command first to verify the supported execution path:
```bash
python scripts/validate_skill.py --help
```
## When to Use
- You need to build a structured inventory of **reagents/antibodies/consumables** from a paper's *Materials and Methods* section.
- A document includes a **Key Resources Table** and you want to convert it into clean CSV outputs.
- You want to extract **instrument/equipment** details (brand + model) from methods text or tables.