Individual skill
cosmic-database
Access COSMIC to download mutation datasets, query Cancer Gene Census, and retrieve mutational signatures when your genomic analysis requires curated somatic mutation resources.
scientific-skills/Evidence Insight/cosmic-database/SKILL.md
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- Last checked
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- Repository last updated
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- License
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- bioinformatics Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- ai Repository topic
- biology Repository topic
- cancer-genomics Repository topic
- data-visualization Repository topic
- differential-expression Repository topic
- genomics Repository topic
- medical Repository topic
- data Derived category
- data-databases Derived category
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SKILL.mdcore · 5,761 bytesSKILL.mdcore · 5,761 bytesSKILL.mdcore · 5,761 bytesSKILL.mdcore · 5,761 bytescosmic-database_audit_result_v1.jsonasset · 12,051 bytesreferences/cosmic_data_reference.mddoc · 575 bytesscripts/download_cosmic.pyruns · 2,363 bytes
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> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)
# COSMIC Database Skill
## When to Use
- Use this skill when you need access cosmic to download mutation datasets, query cancer gene census, and retrieve mutational signatures when your genomic analysis requires curated somatic mutation resources in a reproducible workflow.
- Use this skill when a evidence insight task needs a packaged method instead of ad-hoc freeform output.
- Use this skill when the user expects a concrete deliverable, validation step, or file-based result.
- Use this skill when `scripts/download_cosmic.py` is the most direct path to complete the request.
- Use this skill when you need the `cosmic-database` package behavior rather than a generic answer.
## Key Features
- Scope-focused workflow aligned to: Access COSMIC to download mutation datasets, query Cancer Gene Census, and retrieve mutational signatures when your genomic analysis requires curated somatic mutation resources.