Individual skill
omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
skills-imported/omero-integration/SKILL.md
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SKILL.mdcore · 7,987 bytesSKILL.mdcore · 7,987 bytesSKILL.mdcore · 7,987 bytesSKILL.mdcore · 7,987 bytesSKILL.mdcore · 7,987 bytesSKILL.mdcore · 7,987 bytesreferences/advanced.mddoc · 15,013 bytesreferences/connection.mddoc · 8,404 bytesreferences/data_access.mddoc · 13,555 bytesreferences/image_processing.mddoc · 15,705 bytesreferences/metadata.mddoc · 17,020 bytesreferences/rois.mddoc · 16,388 bytesreferences/scripts.mddoc · 17,319 bytesreferences/tables.mddoc · 14,835 bytes
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# OMERO Integration
## Overview
OMERO is an open-source platform for managing, visualizing, and analyzing microscopy images and metadata. Access images via Python API, retrieve datasets, analyze pixels, manage ROIs and annotations, for high-content screening and microscopy workflows.
## When to Use This Skill
This skill should be used when:
- Working with OMERO Python API (omero-py) to access microscopy data
- Retrieving images, datasets, projects, or screening data programmatically
- Analyzing pixel data and creating derived images
- Creating or managing ROIs (regions of interest) on microscopy images
- Adding annotations, tags, or metadata to OMERO objects