Individual skill
bioinformatics-pro
End-to-end bioinformatics analysis — sequence QC, alignment, and omics pipelines for research data.
skills/bioinformatics-pro/SKILL.md
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## Overview
bioinformatics-pro covers the full lifecycle of a bioinformatics analysis: from raw sequencing reads to
publication-ready results. It focuses on reproducible pipelines for genomics, transcriptomics, and
multi-omics data, emphasizing quality control at every step, correct choice of tools for the question
at hand, and results that can be validated rather than merely generated.
The skill is tool-agnostic but assumes familiarity with the standard ecosystem: command-line workflows
(Bash/Python), workflow managers (Nextflow, Snakemake), and the core sequence-analysis suite
(FastQC, Trimmomatic/cutadapt, BWA, Bowtie2, STAR, samtools, GATK). It does not replace domain
expertise — it structures how you plan, run, and sanity-check analyses.
## When to use
