Individual skill
mri-preprocessing
Structural and functional MRI preprocessing — bias correction, skull-stripping, registration, and QC with fMRIPrep-style pipelines.
skills/mri-preprocessing/SKILL.md
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- Last checked
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- License
- MIT
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## Overview
mri-preprocessing covers the unglamorous but decisive early steps of MRI analysis: converting
DICOMs, correcting intensity inhomogeneities, skull-stripping, tissue segmentation, and registering
brains to templates — plus the QC discipline that catches the misregistrations and artifacts that
would otherwise become "results."
Good preprocessing is invisible; bad preprocessing is the paper. This skill focuses on structural
(T1/T2) and the preprocessing half of functional pipelines, with fMRIPrep as the recommended
reference implementation.
## When to use
- Setting up a new MRI study: sequence choices that affect preprocessing (fieldmaps, multiband,