Individual skill
salmon-quantifier
Salmon pseudo-alignment skill for fast and accurate transcript quantification
library/specializations/domains/science/bioinformatics/skills/salmon-quantifier/SKILL.md
Source commit feb68abe397acc14f32b34984975c48fedba2b33
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- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 9, 2026
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Repository context
- Repository stars (not skill ratings)
- 1,901
- Repository last updated
- Nov 1, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- agent-orchestration Repository topic
- agent-skills Repository topic
- agentic-ai Repository topic
- agentic-workflow Repository topic
- ai-automation Repository topic
- babysitter Repository topic
- claude-code Repository topic
- claude-skills Repository topic
- trustworthy-ai Repository topic
- vibe-coding Repository topic
- transcriptomics Declared skill tag
- quantification Declared skill tag
- rna-seq Declared skill tag
- pseudo-alignment Declared skill tag
- engineering Derived category
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SKILL.mdcore · 1,436 bytes
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# Salmon Quantifier Skill
## Purpose
Enable Salmon pseudo-alignment for fast and accurate transcript quantification.
## Capabilities
- Selective alignment mode
- GC bias correction
- Mapping rate assessment
- Bootstrap uncertainty estimation
- Multi-mapping resolution
- Decoy-aware indexing
## Usage Guidelines