Individual skill
bwa-aligner
BWA-MEM2 alignment skill for mapping sequencing reads to reference genomes with optimized parameter selection
library/specializations/domains/science/bioinformatics/skills/bwa-aligner/SKILL.md
Source commit feb68abe397acc14f32b34984975c48fedba2b33
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- Observed behavior
- Network or broad shell
- Last checked
- Nov 9, 2026
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- 1,905
- Repository last updated
- Nov 1, 2026
- License
- MIT
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- agent-orchestration Repository topic
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- sequence-analysis Declared skill tag
- alignment Declared skill tag
- genomics Declared skill tag
- ngs Declared skill tag
- engineering Derived category
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SKILL.mdcore · 1,655 bytes
Read excerpt
# BWA Aligner Skill
## Purpose
Enable BWA-MEM2 alignment for mapping sequencing reads to reference genomes with optimized parameter selection and quality assessment.
## Capabilities
- Read alignment to reference genomes
- Parameter optimization for different read types
- Multi-threading configuration
- Index generation and management
- Alignment quality metrics reporting
- Support for paired-end and single-end reads
## Usage Guidelines