Skip to content

hotskills.dev

Not in the top 1,000 by GitHub stars

JiamingShi-JsPhys/chelate-shell

Orchestrating local agent skills into deterministic workflows. Built by @JiamingShi-JsPhys, Chelate Shell enforces a 4-layer routing architecture for scientific research.

Claude Code Codex Cursor GitHub Copilot Research Engineering

History

Review weekly changes to SKILL.md before updating. Dates mark the weeks in which we observed each version; checks apply to the recorded commits.

View weekly changes

`skills/ai-trace-remover/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/bibtex-normalizer/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/capstone-labmate/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/conflict-detector/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/data-profiler/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/document-evolution-tracker/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/figure-generator/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/formula-validator/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/fulltext-extractor/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/latex-exporter/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/literature-retriever/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/longitudinal-analysis/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/ml-auditor/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/multi-dim-manager/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/quantitative-validator/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/reference-auditor/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/task-organizer/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Network or broad shell

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

`skills/video-tracker/SKILL.md`

Week of Nov 2, 2026 · Line counts unavailable

Before Not checked yet → After Local scripts

First observation → b85519b411c9

No earlier version was observed for comparison.

Compare on GitHub

View on GitHub Add to my skills

Verified commit b85519b411c909e451c618312fc8fc7edb68050b

Version-pinned installation · Claude Code

git clone --filter=blob:none --no-checkout https://github.com/JiamingShi-JsPhys/chelate-shell.git .hotskills/jiamingshi-jsphys-chelate-shell && git -C .hotskills/jiamingshi-jsphys-chelate-shell checkout --detach b85519b411c909e451c618312fc8fc7edb68050b
# Copy each selected skill directory from .hotskills/jiamingshi-jsphys-chelate-shell into .claude/skills/<skill-name>/

Version-pinned installation · Codex

git clone --filter=blob:none --no-checkout https://github.com/JiamingShi-JsPhys/chelate-shell.git .hotskills/jiamingshi-jsphys-chelate-shell && git -C .hotskills/jiamingshi-jsphys-chelate-shell checkout --detach b85519b411c909e451c618312fc8fc7edb68050b
# Copy each selected skill directory from .hotskills/jiamingshi-jsphys-chelate-shell into .agents/skills/<skill-name>/

Version-pinned installation · Cursor

git clone --filter=blob:none --no-checkout https://github.com/JiamingShi-JsPhys/chelate-shell.git .hotskills/jiamingshi-jsphys-chelate-shell && git -C .hotskills/jiamingshi-jsphys-chelate-shell checkout --detach b85519b411c909e451c618312fc8fc7edb68050b
# Copy each selected skill directory from .hotskills/jiamingshi-jsphys-chelate-shell into .cursor/skills/<skill-name>/

Version-pinned installation · GitHub Copilot

git clone --filter=blob:none --no-checkout https://github.com/JiamingShi-JsPhys/chelate-shell.git .hotskills/jiamingshi-jsphys-chelate-shell && git -C .hotskills/jiamingshi-jsphys-chelate-shell checkout --detach b85519b411c909e451c618312fc8fc7edb68050b
# Copy each selected skill directory from .hotskills/jiamingshi-jsphys-chelate-shell into .github/skills/<skill-name>/

10GitHub stars

Not availablestars in 7 days

18skills in this repository

1commit in 30 days

Heat

Insufficient history

Not enough history yet to measure heat. It appears after a few days of data.

Heat never changes the order by stars, and sponsorship never touches it. How heat works

Stars over time

30-day change not yet available: not enough history.

Individual skills in this repository

ai-trace-remover skills/ai-trace-remover
bibtex-normalizer skills/bibtex-normalizer
capstone-labmate skills/capstone-labmate
conflict-detector skills/conflict-detector
data-profiler skills/data-profiler
document-evolution-tracker skills/document-evolution-tracker
figure-generator skills/figure-generator
formula-validator skills/formula-validator
fulltext-extractor skills/fulltext-extractor
latex-exporter skills/latex-exporter
literature-retriever skills/literature-retriever
longitudinal-analysis skills/longitudinal-analysis
ml-auditor skills/ml-auditor
multi-dim-manager skills/multi-dim-manager
quantitative-validator skills/quantitative-validator
reference-auditor skills/reference-auditor
task-organizer skills/task-organizer
video-tracker skills/video-tracker

How it works

Choose a skill

ai-trace-remover

When your agent uses it

Removes template sentences from a manuscript and scores its 0–100 "AI-likeness" with English and Chinese lexicons. It rewrites only matched patterns and always reports what it changed.

What it loads into context

Frontmatter

107 tokens

Always available to the agent

SKILL.md

503 tokens

When the skill is activated

Reference documents

13,323 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py
src/__init__.py
src/cli.py
src/core/__init__.py
src/core/engine.py
src/core/hard_bans.py
src/core/patterns_en.py
src/core/patterns_zh.py
src/core/sound_rules.py

Files

../../.claude-plugin/marketplace.jsonasset416 bytes
../../.claude-plugin/plugin.jsonasset170 bytes
AUTHORS.mddoc98 bytes
LICENSEasset1,068 bytes
README.mddoc1,001 bytes
SKILL.mdcore1,952 bytes
SKILL.mdcore1,952 bytes
SKILL.mdcore1,952 bytes
manifest.jsonasset492 bytes
pyproject.tomlasset613 bytes
references/ai-patterns-en.mddoc16,441 bytes
references/ai-patterns-zh.mddoc16,532 bytes
references/example-diff.mddoc4,625 bytes
references/revision.mddoc4,487 bytes
references/scoring-rubric.mddoc3,564 bytes
requirements.txtdoc292 bytes
run.pyruns1,387 bytes
src/__init__.pyruns328 bytes
src/cli.pyruns9,347 bytes
src/core/__init__.pyruns1,267 bytes
src/core/engine.pyruns10,818 bytes
src/core/hard_bans.pyruns4,030 bytes
src/core/patterns_en.pyruns7,237 bytes
src/core/patterns_zh.pyruns9,403 bytes
src/core/sound_rules.pyruns4,062 bytes

Read SKILL.md


# ai-trace-remover

Strips formulaic phrasing and grades the residue. It never rewrites your
argument and never deletes a sentence silently.

- **Stage:** `processors` · **Sandbox:** no · **Dependencies:** stdlib only

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action scan -- <file>
```

View the complete source on GitHub

bibtex-normalizer

When your agent uses it

Parses a `.bib` file, removes duplicate entries and writes a normalised bibliography in a fixed field order. Fires before any citation-dependent stage so downstream tools see one consistent shape.

What it loads into context

Frontmatter

103 tokens

Always available to the agent

SKILL.md

494 tokens

When the skill is activated

Reference documents

438 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,691 bytes
SKILL.mdcore1,927 bytes
SKILL.mdcore1,927 bytes
SKILL.mdcore1,927 bytes
assets/config.yamlasset138 bytes
manifest.jsonasset465 bytes
run.pyruns2,673 bytes

Read SKILL.md


# bibtex-normalizer

Normalises and de-duplicates a bibliography. It does not look up missing
metadata and does not verify that an entry exists.

- **Stage:** `ingest` · **Sandbox:** no · **Dependencies:** `bibtexparser`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action normalize --input refs.bib
```

View the complete source on GitHub

capstone-labmate

When your agent uses it

Parses PASCO Capstone `.cap` files into down-sampled CSV/JSON, pre-configures a Capstone run from a lab manual PDF, and drafts a watermarked lab report. It is an interoperability helper for teaching; it never fabricates data and never claims the experiment was performed by the tool.

What it loads into context

Frontmatter

132 tokens

Always available to the agent

SKILL.md

688 tokens

When the skill is activated

Reference documents

2,586 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

conftest.py
run.py
scripts/_capx.py
scripts/draft_report.py
scripts/formula_ast.py
scripts/preconfigure_cap.py
scripts/process_cap.py
tests/test_capx.py
tests/test_draft_report.py
tests/test_preconfigure_cap.py
tests/test_process_cap.py

Files

AUTHORS.mddoc98 bytes
LICENSEasset1,068 bytes
NOTICEasset525 bytes
README.mddoc1,062 bytes
SKILL.mdcore2,622 bytes
SKILL.mdcore2,622 bytes
SKILL.mdcore2,622 bytes
assets/blank.base.capasset4,760 bytes
config/error_corpus.jsonasset3,251 bytes
config/sampling_profiles.jsonasset6,190 bytes
conftest.pyruns394 bytes
manifest.jsonasset455 bytes
pyproject.tomlasset1,828 bytes
requirements.txtdoc104 bytes
run.pyruns2,678 bytes
scripts/_capx.pyruns11,800 bytes
scripts/draft_report.pyruns7,200 bytes
scripts/formula_ast.pyruns13,008 bytes
scripts/preconfigure_cap.pyruns28,864 bytes
scripts/process_cap.pyruns11,168 bytes
skill.jsonasset2,476 bytes
templates/analysis_draft.mddoc1,865 bytes
templates/lab_report_template.mddoc7,327 bytes
tests/test_capx.pyruns3,419 bytes
tests/test_draft_report.pyruns6,607 bytes
tests/test_preconfigure_cap.pyruns15,691 bytes
tests/test_process_cap.pyruns7,126 bytes

Read SKILL.md


# capstone-labmate

Turns Capstone's binary `.cap` output into analysis-ready tables and helps with
the pre-lab and post-lab paperwork. All parsing runs locally.

- **Stage:** `ingest` · **Sandbox:** no · **Dependencies:** stdlib only (`numpy`/`matplotlib`/`pypdf` add optional paths)

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action ingest -- <file.cap>
```

View the complete source on GitHub

conflict-detector

When your agent uses it

Cross-checks two or more documents, datasets or extracted fact tables for contradictions and reports each conflict with a severity. Numbers are compared with hard cross-checks, not fuzzy inference.

What it loads into context

Frontmatter

102 tokens

Always available to the agent

SKILL.md

593 tokens

When the skill is activated

Reference documents

682 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py
src/__init__.py
src/cli.py
src/config.py
src/detect.py
src/detector.py
src/extract.py
src/normalize.py
src/report.py
src/rules.py
tests/__init__.py
tests/conftest.py
tests/test_cli.py
tests/test_detect.py
tests/test_detector.py

Files

.gitignoreasset208 bytes
AUTHORS.mddoc98 bytes
CHANGELOG.mddoc1,582 bytes
CITATION.cffasset665 bytes
LICENSEasset1,068 bytes
README.mddoc1,069 bytes
SKILL.mdcore2,437 bytes
SKILL.mdcore2,437 bytes
SKILL.mdcore2,437 bytes
SKILL.mdcore2,437 bytes
SKILL.mdcore2,437 bytes
config/examples/two_docs.yamlasset313 bytes
config/schema.yamlasset465 bytes
manifest.jsonasset542 bytes
pyproject.tomlasset408 bytes
requirements.txtdoc217 bytes
run.pyruns1,320 bytes
src/__init__.pyruns240 bytes
src/cli.pyruns2,160 bytes
src/config.pyruns3,537 bytes
src/detect.pyruns4,296 bytes
src/detector.pyruns2,851 bytes
src/extract.pyruns3,636 bytes
src/normalize.pyruns2,014 bytes
src/report.pyruns2,707 bytes
src/rules.pyruns4,749 bytes
tests/__init__.pyruns113 bytes
tests/conftest.pyruns444 bytes
tests/test_cli.pyruns3,241 bytes
tests/test_detect.pyruns4,448 bytes
tests/test_detector.pyruns4,677 bytes

Read SKILL.md


# conflict-detector

Finds claims that disagree across sources and grades them by level: entity
(numeric/boolean), clause (categorical), argument (free text). It reports
conflicts; it does not decide which source is right.

- **Stage:** `gates` · **Sandbox:** no · **Dependencies:** stdlib only (`PyYAML` only for `.yaml` configs)

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action run -- --config config/examples/two_docs.yaml

View the complete source on GitHub

data-profiler

When your agent uses it

Profiles a CSV with pandas: row and column counts, per-column missing-value statistics, 1.5·IQR outlier ratios, duplicate rows and constant columns. It certifies that the file was read and characterised — never that it is clean.

What it loads into context

Frontmatter

117 tokens

Always available to the agent

SKILL.md

540 tokens

When the skill is activated

Reference documents

328 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,317 bytes
SKILL.mdcore2,074 bytes
SKILL.mdcore2,074 bytes
SKILL.mdcore2,074 bytes
assets/config.yamlasset152 bytes
manifest.jsonasset465 bytes
run.pyruns2,978 bytes

Read SKILL.md


# data-profiler

Produces the first look at a dataset and reports what is in it. **A PASS means
'characterised', never 'clean'.** The profiler never modifies the input.

- **Stage:** `gates` · **Sandbox:** no · **Dependencies:** `pandas`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action profile --input data.csv
```

View the complete source on GitHub

document-evolution-tracker

When your agent uses it

Tracks how a family of document versions evolved: discovers the version files, aligns them block by block, and reports paragraph-level changes plus the lineage of named concepts across versions. Fires when a set of drafts must be compared over time rather than one pair of files.

What it loads into context

Frontmatter

122 tokens

Always available to the agent

SKILL.md

638 tokens

When the skill is activated

Reference documents

757 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py
src/__init__.py
src/align.py
src/cli.py
src/config.py
src/diff_blocks.py
src/lineage.py
src/report.py
src/tracker.py
src/versioning.py
tests/__init__.py
tests/test_core.py
tests/test_skill_docs.py
tests/test_tracker_cli.py

Files

.gitignoreasset208 bytes
AUTHORS.mddoc98 bytes
CHANGELOG.mddoc1,513 bytes
CITATION.cffasset730 bytes
LICENSEasset1,068 bytes
README.mddoc1,030 bytes
SKILL.mdcore2,649 bytes
SKILL.mdcore2,649 bytes
SKILL.mdcore2,649 bytes
config/examples/family.jsonasset190 bytes
config/examples/family/v1.mddoc189 bytes
config/examples/family/v2.mddoc233 bytes
config/schema.yamlasset411 bytes
manifest.jsonasset442 bytes
pyproject.tomlasset404 bytes
requirements.txtdoc249 bytes
run.pyruns1,297 bytes
src/__init__.pyruns369 bytes
src/align.pyruns1,228 bytes
src/cli.pyruns2,508 bytes
src/config.pyruns2,247 bytes
src/diff_blocks.pyruns4,090 bytes
src/lineage.pyruns3,339 bytes
src/report.pyruns3,164 bytes
src/tracker.pyruns2,794 bytes
src/versioning.pyruns2,312 bytes
tests/__init__.pyruns113 bytes
tests/test_core.pyruns6,488 bytes
tests/test_skill_docs.pyruns1,330 bytes
tests/test_tracker_cli.pyruns6,266 bytes

Read SKILL.md


# document-evolution-tracker

Diffs a whole family of document versions and traces named concepts through
them. It reports **structural** change — block alignment via `difflib` — not
semantic meaning.

- **Stage:** `workspace` · **Sandbox:** no · **Dependencies:** stdlib only (`PyYAML` only for `.yaml` configs)

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action versions -- --config config/examples/family.json

View the complete source on GitHub

figure-generator

When your agent uses it

Renders publication-quality charts from a CSV table (bar, line, scatter) and SEM path diagrams from a JSON spec. Runs inside the process sandbox; output goes to `process/figures/`.

What it loads into context

Frontmatter

107 tokens

Always available to the agent

SKILL.md

537 tokens

When the skill is activated

Reference documents

327 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

scripts/engine.py
scripts/run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,230 bytes
SKILL.mdcore1,991 bytes
SKILL.mdcore1,991 bytes
SKILL.mdcore1,991 bytes
manifest.jsonasset548 bytes
scripts/engine.pyruns29,316 bytes
scripts/run.pyruns2,485 bytes

Read SKILL.md


# figure-generator

Produces figures from data, including AMOS-style structural-equation path
diagrams. It renders what the data says — it never invents points.

- **Stage:** `processors` · **Sandbox:** yes · **Dependencies:** `matplotlib`, `seaborn`, `pandas`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python scripts/run.py --root <WS> --action process --input data.csv --chart bar
```

View the complete source on GitHub

formula-validator

When your agent uses it

Deterministic formula checker for physics and maths. You extract the equation and declare the units; the tool runs five CAS layers plus a pint unit cross-check and returns a strict pass / fail / unknown verdict. Fires on any formula whose correctness matters.

What it loads into context

Frontmatter

117 tokens

Always available to the agent

SKILL.md

790 tokens

When the skill is activated

Reference documents

4,951 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

mcp_server/server.py
run.py
scripts/__init__.py
scripts/cli.py
scripts/core/__init__.py
scripts/core/breakpoint.py
scripts/core/dimensions.py
scripts/core/errors.py
scripts/core/limits.py
scripts/core/matrixprops.py
scripts/core/numeric.py
scripts/core/parsing.py
scripts/core/pint_units.py
scripts/core/pipeline.py
scripts/core/registry.py
scripts/core/report.py
scripts/core/symbolic.py
tests/__init__.py
tests/conftest.py
tests/test_cli_inprocess.py
tests/test_core_direct.py
tests/test_coverage_extra.py
tests/test_dimensions.py
tests/test_end_to_end.py
tests/test_limits.py
tests/test_mcp.py
tests/test_numeric.py
tests/test_parsing.py
tests/test_skill_docs.py
tests/test_symbolic.py

Files

.gitignoreasset155 bytes
AUTHORS.mddoc98 bytes
CHANGELOG.mddoc8,161 bytes
CONTRIBUTING.mddoc5,552 bytes
LICENSEasset1,068 bytes
README.mddoc1,623 bytes
README_zh.mddoc926 bytes
SKILL.mdcore3,080 bytes
SKILL.mdcore3,080 bytes
SKILL.mdcore3,080 bytes
manifest.jsonasset541 bytes
mcp_server/README.mddoc3,192 bytes
mcp_server/mcp_config.example.jsonasset385 bytes
mcp_server/server.pyruns15,270 bytes
requirements.txtdoc48 bytes
run.pyruns5,468 bytes
scripts/__init__.pyruns281 bytes
scripts/cli.pyruns14,247 bytes
scripts/core/__init__.pyruns237 bytes
scripts/core/breakpoint.pyruns5,504 bytes
scripts/core/dimensions.pyruns11,960 bytes
scripts/core/errors.pyruns1,417 bytes
scripts/core/limits.pyruns13,015 bytes
scripts/core/matrixprops.pyruns5,758 bytes
scripts/core/numeric.pyruns10,487 bytes
scripts/core/parsing.pyruns16,211 bytes
scripts/core/pint_units.pyruns7,397 bytes
scripts/core/pipeline.pyruns15,615 bytes
scripts/core/registry.pyruns6,005 bytes
scripts/core/report.pyruns9,572 bytes
scripts/core/symbolic.pyruns4,967 bytes
tests/__init__.pyruns113 bytes
tests/conftest.pyruns1,293 bytes
tests/test_cli_inprocess.pyruns7,862 bytes
tests/test_core_direct.pyruns8,288 bytes
tests/test_coverage_extra.pyruns11,973 bytes
tests/test_dimensions.pyruns4,058 bytes
tests/test_end_to_end.pyruns8,031 bytes
tests/test_limits.pyruns2,808 bytes
tests/test_mcp.pyruns3,834 bytes
tests/test_numeric.pyruns5,418 bytes
tests/test_parsing.pyruns4,967 bytes
tests/test_skill_docs.pyruns7,234 bytes
tests/test_symbolic.pyruns5,347 bytes

Read SKILL.md


# formula-validator

Checks a formula with five independent layers (parse, dimension, limit,
numeric, symbolic) plus a pint unit cross-check, and returns one strict
verdict. You extract and interpret; the tool computes.

- **Stage:** `gates` · **Sandbox:** no · **Dependencies:** `sympy`, `numpy`, `pint`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action validate -- --expr "F = m*a" --units F=N --units m=kg --units a=m/s**2

View the complete source on GitHub

fulltext-extractor

When your agent uses it

Extracts the text of a local PDF into `process/` so later stages can read plain text instead of a binary. Uses `pdfminer.six` with a `pypdf` fallback, and can be limited to selected pages.

What it loads into context

Frontmatter

115 tokens

Always available to the agent

SKILL.md

525 tokens

When the skill is activated

Reference documents

431 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,680 bytes
SKILL.mdcore1,918 bytes
SKILL.mdcore1,918 bytes
SKILL.mdcore1,918 bytes
assets/config.yamlasset275 bytes
manifest.jsonasset488 bytes
run.pyruns2,835 bytes

Read SKILL.md


# fulltext-extractor

Converts a PDF into text files under `process/fulltext/`. It does not
summarise, translate or interpret the text.

- **Stage:** `ingest` · **Sandbox:** no · **Dependencies:** `pdfminer.six` or `pypdf`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action extract --input paper.pdf
```

View the complete source on GitHub

latex-exporter

When your agent uses it

Merges the Markdown reports in `process/` plus the graphics in `process/figures/` into one compilable `.tex` file. Pure standard library — no pandoc, no LaTeX toolchain required to produce the file.

What it loads into context

Frontmatter

116 tokens

Always available to the agent

SKILL.md

515 tokens

When the skill is activated

Reference documents

400 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

scripts/engine.py
scripts/run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,505 bytes
SKILL.mdcore1,949 bytes
SKILL.mdcore1,949 bytes
SKILL.mdcore1,949 bytes
manifest.jsonasset577 bytes
scripts/engine.pyruns11,351 bytes
scripts/run.pyruns1,656 bytes

Read SKILL.md


# latex-exporter

Assembles the deliverable `.tex`. It does not compile it and does not typeset
content you did not write.

- **Stage:** `processors` · **Sandbox:** no · **Dependencies:** stdlib only (no pandoc)

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python scripts/run.py --root <WS> --action export
```

View the complete source on GitHub

literature-retriever

When your agent uses it

Searches arXiv for a keyword phrase and stores the result as JSON in `process/`. Returns metadata only — titles, authors, identifiers, abstracts — and never downloads or redistributes the papers themselves.

What it loads into context

Frontmatter

107 tokens

Always available to the agent

SKILL.md

541 tokens

When the skill is activated

Reference documents

384 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,496 bytes
SKILL.mdcore2,032 bytes
SKILL.mdcore2,032 bytes
SKILL.mdcore2,032 bytes
assets/config.yamlasset231 bytes
manifest.jsonasset446 bytes
run.pyruns2,983 bytes

Read SKILL.md


# literature-retriever

Queries the arXiv API and normalises the response into one JSON file per
search. It does not rank by relevance for you beyond the API's own sort.

- **Stage:** `ingest` · **Sandbox:** no · **Dependencies:** `arxiv`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action search --query "topological insulator"
```

View the complete source on GitHub

longitudinal-analysis

When your agent uses it

Runs a repeated-measures / panel analysis: descriptive statistics, a manipulation check, linear mixed models, mediation and sensitivity analysis. Python steps run anywhere; the mixed-model, mediation and sensitivity steps go through R and are skipped, not replaced, when Rscript is absent.

What it loads into context

Frontmatter

120 tokens

Always available to the agent

SKILL.md

708 tokens

When the skill is activated

Reference documents

729 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

R/lmm.R
R/mediation.R
run.py
src/__init__.py
src/audit.py
src/cli.py
src/config.py
src/pipeline.py
src/r_runner.py
src/steps/__init__.py
src/steps/descriptive.py
src/steps/lmm.py
src/steps/manipulation.py
src/steps/mediation.py
src/steps/sensitivity.py
tests/__init__.py
tests/conftest.py
tests/test_cli.py
tests/test_manipulation.py
tests/test_pipeline.py
tests/test_r_steps.py
tests/test_skill_docs.py

Files

.gitignoreasset277 bytes
AUTHORS.mddoc98 bytes
CHANGELOG.mddoc1,616 bytes
CITATION.cffasset804 bytes
LICENSEasset1,068 bytes
R/lmm.Rruns1,031 bytes
R/mediation.Rruns907 bytes
README.mddoc1,085 bytes
SKILL.mdcore2,780 bytes
SKILL.mdcore2,780 bytes
SKILL.mdcore2,780 bytes
config/examples/behavior_2x2x2.yamlasset950 bytes
config/schema.yamlasset449 bytes
manifest.jsonasset518 bytes
pyproject.tomlasset566 bytes
requirements.txtdoc296 bytes
run.pyruns1,702 bytes
src/__init__.pyruns440 bytes
src/audit.pyruns2,428 bytes
src/cli.pyruns4,678 bytes
src/config.pyruns4,608 bytes
src/pipeline.pyruns3,343 bytes
src/r_runner.pyruns2,564 bytes
src/steps/__init__.pyruns385 bytes
src/steps/descriptive.pyruns1,857 bytes
src/steps/lmm.pyruns1,376 bytes
src/steps/manipulation.pyruns1,349 bytes
src/steps/mediation.pyruns2,139 bytes
src/steps/sensitivity.pyruns2,364 bytes
tests/__init__.pyruns113 bytes
tests/conftest.pyruns1,237 bytes
tests/fixture_panel.csvasset1,330 bytes
tests/test_cli.pyruns3,457 bytes
tests/test_manipulation.pyruns2,069 bytes
tests/test_pipeline.pyruns4,992 bytes
tests/test_r_steps.pyruns5,208 bytes
tests/test_skill_docs.pyruns1,942 bytes

Read SKILL.md


# longitudinal-analysis

Orchestrates a fixed pipeline of statistical steps over panel data and reports
each step's status. It never substitutes hand-written Python for a missing R
step.

- **Stage:** `gates` · **Sandbox:** no · **Dependencies:** `pandas` (`numpy`, R with lme4/lavaan, `python-docx` optional)

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action list-steps -- --config config/examples/behavior_2x2x2.yaml

View the complete source on GitHub

ml-auditor

When your agent uses it

Audits a labelled dataset for leakage and label errors with scikit-learn, and optionally takes a second opinion from cleanlab. Runs inside the process sandbox; missing dependencies degrade the gate to `UNVERIFIED`.

What it loads into context

Frontmatter

110 tokens

Always available to the agent

SKILL.md

501 tokens

When the skill is activated

Reference documents

494 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

scripts/engine.py
scripts/run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,897 bytes
SKILL.mdcore1,901 bytes
SKILL.mdcore1,901 bytes
SKILL.mdcore1,901 bytes
manifest.jsonasset691 bytes
scripts/engine.pyruns12,744 bytes
scripts/run.pyruns2,535 bytes

Read SKILL.md


# ml-auditor

Detects data leakage (a feature that encodes the target) and suspicious labels
in a CSV. It audits the dataset; it does not train your final model.

- **Stage:** `gates` · **Sandbox:** yes · **Dependencies:** `scikit-learn`, `pandas` (`cleanlab` optional)

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python scripts/run.py --root <WS> --action gate --input data.csv --label target
```

View the complete source on GitHub

multi-dim-manager

When your agent uses it

Runs a parameter sweep over many rounds and keeps a hash-based audit trail. Snapshots the declared critical files before and after each round, records parameters, hashes, timestamps and status, and rolls any past round back non-destructively. Fires when a workflow repeats over a Cartesian parameter space or when rollback to an earlier round must stay possible.

What it loads into context

Frontmatter

138 tokens

Always available to the agent

SKILL.md

799 tokens

When the skill is activated

Reference documents

1,299 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py
sample_plugin.py
scripts/__init__.py
scripts/aggregator.py
scripts/audit.py
scripts/common.py
scripts/config.py
scripts/errors.py
scripts/executor.py
scripts/param_space.py
scripts/report.py
scripts/rollback.py
scripts/run.py
scripts/snapshot.py
scripts/verify.py
tests/__init__.py
tests/conftest.py
tests/test_aggregator.py
tests/test_audit.py
tests/test_config.py
tests/test_executor.py
tests/test_param_space.py
tests/test_report.py
tests/test_rollback.py
tests/test_run_cli.py
tests/test_skill_docs.py
tests/test_snapshot.py
tests/test_verify.py

Files

.gitignoreasset178 bytes
AUTHORS.mddoc98 bytes
CHANGELOG.mddoc2,762 bytes
CITATION.cffasset704 bytes
LICENSEasset1,068 bytes
README.mddoc1,610 bytes
README_zh.mddoc823 bytes
SKILL.mdcore3,269 bytes
SKILL.mdcore3,269 bytes
SKILL.mdcore3,269 bytes
config.example.yamlasset1,512 bytes
manifest.jsonasset424 bytes
pyproject.tomlasset468 bytes
requirements.txtdoc193 bytes
run.pyruns2,163 bytes
sample_plugin.pyruns1,648 bytes
scripts/__init__.pyruns324 bytes
scripts/aggregator.pyruns2,016 bytes
scripts/audit.pyruns3,813 bytes
scripts/common.pyruns446 bytes
scripts/config.pyruns3,342 bytes
scripts/errors.pyruns482 bytes
scripts/executor.pyruns4,348 bytes
scripts/param_space.pyruns4,268 bytes
scripts/report.pyruns1,948 bytes
scripts/rollback.pyruns2,257 bytes
scripts/run.pyruns10,054 bytes
scripts/snapshot.pyruns3,151 bytes
scripts/verify.pyruns2,380 bytes
tests/__init__.pyruns113 bytes
tests/conftest.pyruns2,670 bytes
tests/test_aggregator.pyruns1,480 bytes
tests/test_audit.pyruns1,752 bytes
tests/test_config.pyruns3,467 bytes
tests/test_executor.pyruns2,970 bytes
tests/test_param_space.pyruns2,710 bytes
tests/test_report.pyruns1,513 bytes
tests/test_rollback.pyruns2,470 bytes
tests/test_run_cli.pyruns9,150 bytes
tests/test_skill_docs.pyruns4,210 bytes
tests/test_snapshot.pyruns3,124 bytes
tests/test_verify.pyruns1,170 bytes

Read SKILL.md


# multi-dim-manager

Orchestrates repeated rounds: expands the parameter grid, snapshots declared
critical paths, records an auditable round log, and restores any past round.
It **never computes your domain result** — the per-round computation belongs to
your plugin.

- **Stage:** `workspace` · **Sandbox:** no · **Dependencies:** stdlib only (`PyYAML` only for `.yaml` configs; JSON configs need nothing)

## Quick Execution

Run this exact form — do not read the source tree:

```bash

View the complete source on GitHub

quantitative-validator

When your agent uses it

Atom-conservation gate for molecular formulae and chemical equations. Parses Hill notation, balances both sides and cross-checks with rdkit; runs inside the process sandbox and degrades to `UNVERIFIED` when rdkit is absent.

What it loads into context

Frontmatter

114 tokens

Always available to the agent

SKILL.md

479 tokens

When the skill is activated

Reference documents

488 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

scripts/engine.py
scripts/run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,719 bytes
SKILL.mdcore1,945 bytes
SKILL.mdcore1,945 bytes
SKILL.mdcore1,945 bytes
manifest.jsonasset622 bytes
scripts/engine.pyruns10,419 bytes
scripts/run.pyruns3,033 bytes

Read SKILL.md


# quantitative-validator

Verifies that every element is conserved across a formula or a reaction. It
does not predict products, energies or mechanisms.

- **Stage:** `gates` · **Sandbox:** yes · **Dependencies:** `rdkit`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python scripts/run.py --root <WS> --action gate --formula "H2 + O2 -> H2O"
```

View the complete source on GitHub

reference-auditor

When your agent uses it

Extracts every DOI from a draft and verifies it against the Crossref API. A DOI that does not exist fails the gate and stops the pipeline; a network failure is reported as unknown, never as a pass.

What it loads into context

Frontmatter

110 tokens

Always available to the agent

SKILL.md

531 tokens

When the skill is activated

Reference documents

387 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py

Files

LICENSEasset1,068 bytes
README.mddoc1,501 bytes
SKILL.mdcore2,080 bytes
SKILL.mdcore2,080 bytes
SKILL.mdcore2,080 bytes
assets/config.yamlasset158 bytes
manifest.jsonasset497 bytes
run.pyruns3,071 bytes

Read SKILL.md


# reference-auditor

Checks that each DOI in the draft resolves in Crossref. It confirms existence
only — not that the DOI is the paper you meant to cite.

- **Stage:** `gates` · **Sandbox:** no · **Dependencies:** `requests`

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action audit --input draft.md
```

View the complete source on GitHub

task-organizer

When your agent uses it

Mandatory entry point for task folders. Builds the standard four-zone workspace, files every deliverable by provenance, verifies each run with automatic rollback, and keeps the `_broadcast/` index that lets a later session read one summary instead of every original. Fires whenever a task folder is named or attached and work starts inside it.

What it loads into context

Frontmatter

134 tokens

Always available to the agent

SKILL.md

1,029 tokens

When the skill is activated

Reference documents

4,888 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

Files

.gitignoreasset109 bytes
.task-organizer.yml.exampleasset4,248 bytes
AUTHORS.mddoc98 bytes
CHANGELOG.mddoc10,335 bytes
CITATION.cffasset769 bytes
CONTRIBUTING.mddoc3,878 bytes
LICENSEasset1,068 bytes
README.mddoc1,109 bytes
README_zh.mddoc2,092 bytes
SKILL.mdcore4,098 bytes
SKILL.mdcore4,098 bytes
SKILL.mdcore4,098 bytes
SKILL.mdcore4,098 bytes
assets/index-template.mddoc417 bytes
assets/verification-report-template.mddoc1,226 bytes
manifest.jsonasset523 bytes
pyproject.tomlasset606 bytes
requirements.txtdoc535 bytes
run.pyruns2,256 bytes
scripts/__init__.pyruns1,431 bytes
scripts/broadcast.pyruns26,551 bytes
scripts/dedupe.pyruns17,635 bytes
scripts/doctor.pyruns9,358 bytes
scripts/hashcache.pyruns5,968 bytes
scripts/history.pyruns10,658 bytes
scripts/index_md.pyruns8,168 bytes
scripts/index_xlsx.pyruns4,657 bytes
scripts/init.pyruns14,907 bytes
scripts/organize.pyruns23,286 bytes
scripts/rollback.pyruns12,822 bytes
scripts/rotate.pyruns6,576 bytes
scripts/rules.pyruns17,681 bytes
scripts/run.pyruns35,960 bytes
scripts/scan.pyruns7,120 bytes
scripts/snapshot.pyruns9,278 bytes
scripts/sources.pyruns7,592 bytes
scripts/text_extract.pyruns20,499 bytes
scripts/utils/__init__.pyruns24,497 bytes
scripts/utils/logger.pyruns4,457 bytes
scripts/verify.pyruns15,426 bytes
tests/__init__.pyruns105 bytes
tests/conftest.pyruns4,540 bytes
tests/test_broadcast.pyruns32,053 bytes
tests/test_dedupe.pyruns4,899 bytes
tests/test_doctor.pyruns4,672 bytes
tests/test_hashcache.pyruns6,653 bytes
tests/test_history.pyruns4,165 bytes
tests/test_index.pyruns5,470 bytes
tests/test_init.pyruns10,543 bytes
tests/test_logger.pyruns3,439 bytes
tests/test_organize.pyruns11,493 bytes
tests/test_rollback.pyruns5,231 bytes
tests/test_rotate.pyruns8,240 bytes
tests/test_rules.pyruns13,341 bytes
tests/test_run.pyruns21,888 bytes
tests/test_scan.pyruns3,867 bytes
tests/test_skill_docs.pyruns16,856 bytes
tests/test_snapshot.pyruns4,122 bytes
tests/test_sources.pyruns6,218 bytes
tests/test_verify.pyruns7,872 bytes

Read SKILL.md


# task-organizer

Builds and maintains the workspace skeleton — `material/initial/`,
`material/downloaded/`, `process/`, `results/` and `_broadcast/` — files each
deliverable by provenance, and verifies each run. It never edits the content of
your documents; it only decides where files belong.

- **Stage:** `workspace` · **Sandbox:** no · **Dependencies:** stdlib only (`openpyxl` adds the xlsx index, `PyYAML` the YAML rules)

## Quick Execution

Run this exact form — do not read the source tree:

```bash

View the complete source on GitHub

video-tracker

When your agent uses it

Turns an experiment video into reproducible physics data: tracks declared objects (CSRT with template fallback), computes the amplitude spectrum of the coordinate series, and runs physics-consistency probes. Experimental and unstable — every run must be checked against a known reference.

What it loads into context

Frontmatter

118 tokens

Always available to the agent

SKILL.md

776 tokens

When the skill is activated

Reference documents

1,871 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

Quick Execution
When to use
When NOT to use
Actions
Hard constraints
Outputs
Failure handling
Limitations

Scripts executed separately

run.py
scripts/__init__.py
scripts/config.py
scripts/data_export.py
scripts/errors.py
scripts/fft_analyzer.py
scripts/physics.py
scripts/report.py
scripts/run.py
scripts/tracker.py
tests/__init__.py
tests/conftest.py
tests/test_config.py
tests/test_data_export.py
tests/test_fft_analyzer.py
tests/test_physics.py
tests/test_report.py
tests/test_run_cli.py
tests/test_skill_docs.py
tests/test_tracker.py

Files

.gitignoreasset325 bytes
AUTHORS.mddoc98 bytes
CHANGELOG.mddoc4,496 bytes
LICENSEasset1,068 bytes
README.mddoc1,614 bytes
README_zh.mddoc1,089 bytes
SKILL.mdcore3,087 bytes
SKILL.mdcore3,087 bytes
SKILL.mdcore3,087 bytes
assets/example_output/demo_fft.jsonasset1,330 bytes
assets/example_output/demo_spectra.pngasset122,696 bytes
assets/example_output/demo_summary.jsonasset453 bytes
assets/example_output/demo_tracking.csvasset6,487 bytes
config.yamlasset3,792 bytes
manifest.jsonasset481 bytes
requirements.txtdoc296 bytes
run.pyruns2,137 bytes
scripts/__init__.pyruns58 bytes
scripts/config.pyruns11,404 bytes
scripts/data_export.pyruns3,862 bytes
scripts/errors.pyruns483 bytes
scripts/fft_analyzer.pyruns8,557 bytes
scripts/physics.pyruns18,439 bytes
scripts/report.pyruns3,685 bytes
scripts/run.pyruns15,342 bytes
scripts/tracker.pyruns22,619 bytes
tests/__init__.pyruns34 bytes
tests/conftest.pyruns2,877 bytes
tests/test_config.pyruns6,617 bytes
tests/test_data_export.pyruns3,461 bytes
tests/test_fft_analyzer.pyruns5,633 bytes
tests/test_physics.pyruns7,596 bytes
tests/test_report.pyruns2,920 bytes
tests/test_run_cli.pyruns4,750 bytes
tests/test_skill_docs.pyruns5,024 bytes
tests/test_tracker.pyruns12,962 bytes

Read SKILL.md


# video-tracker

Extracts coordinates from a video, derives spectra, and probes physical
consistency. It never modifies the raw video and requires every parameter to
come from the config.

- **Stage:** `ingest` · **Sandbox:** no · **Dependencies:** `numpy`, `opencv` (`matplotlib` optional for figures)

## Quick Execution

Run this exact form — do not read the source tree:

```bash
python run.py --root <WS> --action probe -- --config cfg.json

View the complete source on GitHub

Skills included

ai-trace-remover
bibtex-normalizer
capstone-labmate
conflict-detector
data-profiler
document-evolution-tracker
figure-generator
formula-validator
fulltext-extractor
latex-exporter
literature-retriever
longitudinal-analysis
ml-auditor
multi-dim-manager
quantitative-validator
reference-auditor
task-organizer
video-tracker

Repository facts

License: MIT
Created: Oct 20, 2026
Last pushed: Nov 6, 2026
Forks: 1
Open issues: 0
Project activity: Active

Before you install

Network or broad shell

Automated signals, not a guarantee

Checked Nov 4, 2026

Not fully analyzed: some files were too long, unreadable or missing. This never lowers the level.

Show 39 notes

skills/ai-trace-remover/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/ai-trace-remover/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/bibtex-normalizer/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/bibtex-normalizer/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/capstone-labmate/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/capstone-labmate/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/conflict-detector/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/conflict-detector/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/conflict-detector/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/conflict-detector/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/data-profiler/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/data-profiler/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/document-evolution-tracker/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/document-evolution-tracker/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/figure-generator/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/figure-generator/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/formula-validator/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/formula-validator/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/fulltext-extractor/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
skills/fulltext-extractor/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed

No broad tool permissions
No dangerous shell commands
85 network referencesin 24 files: task-organizer/tests/test_sources.py:62 task-organizer/tests/test_broadcast.py:65 task-organizer/tests/test_organize.py:64 and 21 more
No hidden or obfuscated text
No instruction overrides
204 executable scriptsin 204 files: ai-trace-remover/run.py:1 ai-trace-remover/src/__init__.py:1 ai-trace-remover/src/cli.py:1 and 201 more
17 references to secretsin 3 files: task-organizer/scripts/utils/__init__.py:885 formula-validator/mcp_server/server.py:42 longitudinal-analysis/src/audit.py:43
No requests to vote in Hot

Show all 306 signals by file

`.claude-plugin/marketplace.json`

Network accessline 1

{   "$schema": "https://www.schemastore.org/claude-code-marketplace.json",

Network accessline 2

"$schema": "https://www.schemastore.org/claude-code-marketplace.json",

`skills/ai-trace-remover/run.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/init.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/cli.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/core/init.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/core/engine.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/core/hard_bans.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/core/patterns_en.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/core/patterns_zh.py`

Executable scriptline 1
```
Executable file
```

`skills/ai-trace-remover/src/core/sound_rules.py`

Executable scriptline 1
```
Executable file
```

`skills/bibtex-normalizer/run.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/conftest.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/pyproject.toml`

Network accessline 33

[project.urls] Homepage = "https://github.com/JiamingShi-JsPhys/capstone-labmate"

Network accessline 34

Homepage = "https://github.com/JiamingShi-JsPhys/capstone-labmate"

Network accessline 35

Repository = "https://github.com/JiamingShi-JsPhys/capstone-labmate.git"

Network accessline 36

Issues = "https://github.com/JiamingShi-JsPhys/capstone-labmate/issues"

`skills/capstone-labmate/run.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/scripts/_capx.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/scripts/draft_report.py`

Executable scriptline 1
```
#!/usr/bin/env python
```

`skills/capstone-labmate/scripts/formula_ast.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/scripts/preconfigure_cap.py`

Executable scriptline 1
```
#!/usr/bin/env python
```

`skills/capstone-labmate/scripts/process_cap.py`

Executable scriptline 1
```
#!/usr/bin/env python
```

`skills/capstone-labmate/tests/test_capx.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/tests/test_draft_report.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/tests/test_preconfigure_cap.py`

Executable scriptline 1
```
Executable file
```

`skills/capstone-labmate/tests/test_process_cap.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/CHANGELOG.md`

Network accessline 3

All notable changes to this skill are documented here. The format is based on [Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 4

[Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 5

[Semantic Versioning](https://semver.org/).

`skills/conflict-detector/CITATION.cff`

Network accessline 10

- family-names: "Shi"     given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 11

given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000" repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

Network accessline 12

orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 13

repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

`skills/conflict-detector/run.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/init.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/cli.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/config.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/detect.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/detector.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/extract.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/normalize.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/report.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/src/rules.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/tests/init.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/tests/conftest.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/tests/test_cli.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/tests/test_detect.py`

Executable scriptline 1
```
Executable file
```

`skills/conflict-detector/tests/test_detector.py`

Executable scriptline 1
```
Executable file
```

`skills/data-profiler/run.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/CHANGELOG.md`

Network accessline 3

All notable changes to this skill are documented here. The format is based on [Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 4

[Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 5

[Semantic Versioning](https://semver.org/).

`skills/document-evolution-tracker/CITATION.cff`

Network accessline 10

- family-names: "Shi"     given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 11

given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000" repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

Network accessline 12

orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 13

repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

`skills/document-evolution-tracker/run.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/init.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/align.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/cli.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/config.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/diff_blocks.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/lineage.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/report.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/tracker.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/src/versioning.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/tests/init.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/tests/test_core.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/tests/test_skill_docs.py`

Executable scriptline 1
```
Executable file
```

`skills/document-evolution-tracker/tests/test_tracker_cli.py`

Executable scriptline 1
```
Executable file
```

`skills/figure-generator/README.md`

Network accessline 3

Publication-quality chart processor. Renders a bar / line / scatter plot from a CSV with [matplotlib](https://matplotlib.org/) + seaborn, applying top-journal

Network accessline 4

a CSV with [matplotlib](https://matplotlib.org/) + seaborn, applying top-journal

`skills/figure-generator/scripts/engine.py`

Executable scriptline 1
```
Executable file
```

`skills/figure-generator/scripts/run.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/CHANGELOG.md`

Network accessline 3

All notable changes to this project are documented here, following [Keep a Changelog](https://keepachangelog.com/en/1.1.0/) and

Network accessline 4

[Keep a Changelog](https://keepachangelog.com/en/1.1.0/) and

Network accessline 5

[Semantic Versioning](https://semver.org/).

`skills/formula-validator/CONTRIBUTING.md`

Network accessline 20

# 1. Clone the repository git clone https://github.com/JiamingShi-JsPhys/agent-skills.git

Network accessline 21

git clone https://github.com/JiamingShi-JsPhys/agent-skills.git

`skills/formula-validator/mcp_server/server.py`

Executable scriptline 1
```
#!/usr/bin/env python
```
Access to secretsline 42
```
[Credential-related source omitted]
```

`skills/formula-validator/run.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/init.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/cli.py`

Executable scriptline 1
```
#!/usr/bin/env python
```

`skills/formula-validator/scripts/core/init.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/breakpoint.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/dimensions.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/errors.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/limits.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/matrixprops.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/numeric.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/parsing.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/pint_units.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/pipeline.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/registry.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/report.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/scripts/core/symbolic.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/init.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/conftest.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_cli_inprocess.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_core_direct.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_coverage_extra.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_dimensions.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_end_to_end.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_limits.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_mcp.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_numeric.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_parsing.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_skill_docs.py`

Executable scriptline 1
```
Executable file
```

`skills/formula-validator/tests/test_symbolic.py`

Executable scriptline 1
```
Executable file
```

`skills/fulltext-extractor/run.py`

Executable scriptline 1
```
Executable file
```

`skills/latex-exporter/scripts/engine.py`

Executable scriptline 1
```
Executable file
```

`skills/latex-exporter/scripts/run.py`

Executable scriptline 1
```
Executable file
```

`skills/literature-retriever/run.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/CHANGELOG.md`

Network accessline 3

All notable changes to this skill are documented here. The format is based on [Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 4

[Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 5

[Semantic Versioning](https://semver.org/).

`skills/longitudinal-analysis/CITATION.cff`

Network accessline 10

- family-names: "Shi"     given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 11

given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000" repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

Network accessline 12

orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 13

repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

`skills/longitudinal-analysis/R/lmm.R`

Executable scriptline 1
```
#!/usr/bin/env Rscript
```

`skills/longitudinal-analysis/R/mediation.R`

Executable scriptline 1
```
#!/usr/bin/env Rscript
```

`skills/longitudinal-analysis/run.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/init.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/audit.py`

Executable scriptline 1
```
Executable file
```
Access to secretsline 43
```
[Credential-related source omitted]
```

`skills/longitudinal-analysis/src/cli.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/config.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/pipeline.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/r_runner.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/steps/init.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/steps/descriptive.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/steps/lmm.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/steps/manipulation.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/steps/mediation.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/src/steps/sensitivity.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/tests/init.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/tests/conftest.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/tests/test_cli.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/tests/test_manipulation.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/tests/test_pipeline.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/tests/test_r_steps.py`

Executable scriptline 1
```
Executable file
```

`skills/longitudinal-analysis/tests/test_skill_docs.py`

Executable scriptline 1
```
Executable file
```

`skills/ml-auditor/scripts/engine.py`

Executable scriptline 1
```
Executable file
```

`skills/ml-auditor/scripts/run.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/CHANGELOG.md`

Network accessline 3

All notable changes to this skill are documented here. The format is based on [Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 4

[Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 5

[Semantic Versioning](https://semver.org/).

`skills/multi-dim-manager/CITATION.cff`

Network accessline 10

- family-names: "Shi"     given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 11

given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000" repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

Network accessline 12

orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 13

repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

`skills/multi-dim-manager/run.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/sample_plugin.py`

Executable scriptline 1
```
#!/usr/bin/env python3
```

`skills/multi-dim-manager/scripts/init.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/aggregator.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/audit.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/common.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/config.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/errors.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/executor.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/param_space.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/report.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/rollback.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/run.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/snapshot.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/scripts/verify.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/init.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/conftest.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_aggregator.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_audit.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_config.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_executor.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_param_space.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_report.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_rollback.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_run_cli.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_skill_docs.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_snapshot.py`

Executable scriptline 1
```
Executable file
```

`skills/multi-dim-manager/tests/test_verify.py`

Executable scriptline 1
```
Executable file
```

`skills/quantitative-validator/scripts/engine.py`

Executable scriptline 1
```
Executable file
```

`skills/quantitative-validator/scripts/run.py`

Executable scriptline 1
```
Executable file
```

`skills/reference-auditor/README.md`

Network accessline 20

python run.py --root <workspace> --action audit --input draft.md python run.py --root <workspace> --action audit --text "see https://doi.org/10.9999/fake"

Network accessline 21

python run.py --root <workspace> --action audit --text "see https://doi.org/10.9999/fake"

`skills/reference-auditor/run.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/CHANGELOG.md`

Network accessline 3

All notable changes to this project are documented here, following [Keep a Changelog](https://keepachangelog.com/en/1.1.0/) and

Network accessline 4

[Keep a Changelog](https://keepachangelog.com/en/1.1.0/) and

Network accessline 5

[Semantic Versioning](https://semver.org/).

`skills/task-organizer/CITATION.cff`

Network accessline 10

- family-names: "Shi"     given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 11

given-names: "Jiaming"     orcid: "https://orcid.org/0000-0000-0000-0000" repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

Network accessline 12

orcid: "https://orcid.org/0000-0000-0000-0000"

Network accessline 13

repository-code: "https://github.com/JiamingShi-JsPhys/agent-skills"

`skills/task-organizer/CONTRIBUTING.md`

Network accessline 10

# 1. Clone the repository git clone https://github.com/JiamingShi-JsPhys/agent-skills.git

Network accessline 11

git clone https://github.com/JiamingShi-JsPhys/agent-skills.git

`skills/task-organizer/run.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/init.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/broadcast.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/dedupe.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/doctor.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/hashcache.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/history.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/index_md.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/index_xlsx.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/init.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/organize.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/rollback.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/rotate.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/rules.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/run.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/scan.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/snapshot.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/sources.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/text_extract.py`

Executable scriptline 1
```
Executable file
```

Network accessline 95

_W_NS = "{http://schemas.openxmlformats.org/wordprocessingml/2006/main}"

Network accessline 96

_A_NS = "{http://schemas.openxmlformats.org/drawingml/2006/main}"

`skills/task-organizer/scripts/utils/init.py`

Executable scriptline 1
```
Executable file
```
Access to secretsline 885
```
[Credential-related source omitted]
```
Access to secretsline 887
```
[Credential-related source omitted]
```
Access to secretsline 889
```
[Credential-related source omitted]
```
Access to secretsline 891
```
[Credential-related source omitted]
```
Access to secretsline 903
```
[Credential-related source omitted]
```
Access to secretsline 929
```
[Credential-related source omitted]
```
Access to secretsline 965
```
[Credential-related source omitted]
```
Access to secretsline 1139
```
[Credential-related source omitted]
```
Access to secretsline 1213
```
[Credential-related source omitted]
```
Access to secretsline 1269
```
[Credential-related source omitted]
```
Access to secretsline 1305
```
[Credential-related source omitted]
```
Access to secretsline 1319
```
[Credential-related source omitted]
```
Access to secretsline 1331
```
[Credential-related source omitted]
```
Network accessline 1335
```
"https://api.openai.com/v1",
```
Access to secretsline 1339
```
[Credential-related source omitted]
```
Network accessline 1363
```
req = urllib.request.Request(
```
Access to secretsline 1373
```
[Credential-related source omitted]
```

Network accessline 1381

with urllib.request.urlopen(req, timeout=30) as resp:

`skills/task-organizer/scripts/utils/logger.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/scripts/verify.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/init.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/conftest.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_broadcast.py`

Executable scriptline 1
```
Executable file
```

Network accessline 65

_W_NS = "http://schemas.openxmlformats.org/wordprocessingml/2006/main"

Network accessline 67

_A_NS = "http://schemas.openxmlformats.org/drawingml/2006/main"

Network accessline 69

_P_NS = "http://schemas.openxmlformats.org/presentationml/2006/main"

Network accessline 143

'<?xml version="1.0"?><sst xmlns="http://schemas.openxmlformats.org/'

Network accessline 159

'<?xml version="1.0"?><worksheet xmlns="http://schemas.openxmlformats'

`skills/task-organizer/tests/test_dedupe.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_doctor.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_hashcache.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_history.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_index.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_init.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_logger.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_organize.py`

Executable scriptline 1
```
Executable file
```

Network accessline 64

def test_marked_download_goes_to_downloaded(sample_task: Path) -> None:     man = sources.SourceManifest.load(sample_task)     man.add(sources.KIND_DOWNLOADED, "download.pdf", url="https://example.test/x.pdf")

Network accessline 65

man = sources.SourceManifest.load(sample_task)     man.add(sources.KIND_DOWNLOADED, "download.pdf", url="https://example.test/x.pdf")     man.save()

Network accessline 66

man.add(sources.KIND_DOWNLOADED, "download.pdf", url="https://example.test/x.pdf")

Network accessline 99

man = sources.SourceManifest.load(sample_task)     man.add(sources.KIND_DOWNLOADED, "download.pdf", url="https://example.test/x.pdf")

Network accessline 100

man.add(sources.KIND_DOWNLOADED, "download.pdf", url="https://example.test/x.pdf")

`skills/task-organizer/tests/test_rollback.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_rotate.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_rules.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_run.py`

Executable scriptline 1
```
Executable file
```

Network accessline 371

(sample_task / "fetched.pdf").write_text("from the web", encoding="utf-8")     run.mark_downloaded(sample_task, sample_task / "fetched.pdf", url="https://x/y")

Network accessline 372

run.mark_downloaded(sample_task, sample_task / "fetched.pdf", url="https://x/y")

Network accessline 481

rc = run.run_from_cli(         ["mark-downloaded", str(sample_task), str(sample_task / "fetched.pdf"),          "--url", "https://example.org/a.pdf"]

Network accessline 482

["mark-downloaded", str(sample_task), str(sample_task / "fetched.pdf"),          "--url", "https://example.org/a.pdf"]     )

Network accessline 483
```
"--url", "https://example.org/a.pdf"]
```

`skills/task-organizer/tests/test_scan.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_skill_docs.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_snapshot.py`

Executable scriptline 1
```
Executable file
```

`skills/task-organizer/tests/test_sources.py`

Executable scriptline 1
```
Executable file
```

Network accessline 62

def test_add_is_idempotent_and_preserves_metadata(tmp_path: Path) -> None:     man = sources.SourceManifest(root=tmp_path)     assert man.add(sources.KIND_USER, "a.txt", url="http://x", note="n") is True

Network accessline 63

man = sources.SourceManifest(root=tmp_path)     assert man.add(sources.KIND_USER, "a.txt", url="http://x", note="n") is True     first_at = man.user[0].at

Network accessline 64

assert man.add(sources.KIND_USER, "a.txt", url="http://x", note="n") is True

Network accessline 67

assert man.add(sources.KIND_USER, "a.txt", url="http://other") is False

Network accessline 68
```
assert man.user[0].url == "http://x"
```

Network accessline 118

man = sources.SourceManifest(root=tmp_path)     man.add(sources.KIND_USER, "my_notes.txt", note="hand-written")     man.add(sources.KIND_DOWNLOADED, "paper.pdf", url="https://arxiv.org/abs/1")

Network accessline 119

man.add(sources.KIND_USER, "my_notes.txt", note="hand-written")     man.add(sources.KIND_DOWNLOADED, "paper.pdf", url="https://arxiv.org/abs/1")     written = man.save()

Network accessline 120

man.add(sources.KIND_DOWNLOADED, "paper.pdf", url="https://arxiv.org/abs/1")

Network accessline 126

assert loaded.is_verbatim("my_notes.txt") is True     assert loaded.kind_of("paper.pdf") == sources.KIND_DOWNLOADED     assert loaded.downloaded[0].url == "https://arxiv.org/abs/1"

Network accessline 128

assert loaded.downloaded[0].url == "https://arxiv.org/abs/1"

`skills/task-organizer/tests/test_verify.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/CHANGELOG.md`

Network accessline 3

All notable changes to this skill are documented here. The format is based on [Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 4

[Keep a Changelog](https://keepachangelog.com/), and this project adheres to

Network accessline 5

[Semantic Versioning](https://semver.org/).

`skills/video-tracker/run.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/init.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/config.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/data_export.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/errors.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/fft_analyzer.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/physics.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/report.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/scripts/run.py`

Executable scriptline 1
```
#!/usr/bin/env python3
```

`skills/video-tracker/scripts/tracker.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/init.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/conftest.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_config.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_data_export.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_fft_analyzer.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_physics.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_report.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_run_cli.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_skill_docs.py`

Executable scriptline 1
```
Executable file
```

`skills/video-tracker/tests/test_tracker.py`

Executable scriptline 1
```
Executable file
```

How the signals fit together

Facts from a static read of the files at the pinned commit. They describe what the code does, not why.

Some files could not be read; the facts below still hold.

Declared and executed: 2 facts

Contacts schemas.openxmlformats.org, which SKILL.md, the README and the plugin manifest do not mentiontask-organizer/scripts/text_extract.py:95High confidence
Contacts api.openai.com, which SKILL.md, the README and the plugin manifest do not mentiontask-organizer/scripts/utils/__init__.py:1335High confidence

Signal confidence: 280 facts

Executable script in prose of a file that runsai-trace-remover/run.py:1Low confidence
Executable script in prose of a file that runsai-trace-remover/src/__init__.py:1Low confidence
Executable script in a comment of a file that runsai-trace-remover/src/cli.py:1Low confidence
Executable script in prose of a file that runsai-trace-remover/src/core/__init__.py:1Low confidence
Executable script in a comment of a file that runsai-trace-remover/src/core/engine.py:1Low confidence
Executable script in a comment of a file that runsai-trace-remover/src/core/hard_bans.py:1Low confidence
Executable script in a comment of a file that runsai-trace-remover/src/core/patterns_en.py:1Low confidence
Executable script in a comment of a file that runsai-trace-remover/src/core/patterns_zh.py:1Low confidence
Executable script in a comment of a file that runsai-trace-remover/src/core/sound_rules.py:1Low confidence
Executable script in prose of a file that runsbibtex-normalizer/run.py:1Low confidence
Executable script in prose of a file that runscapstone-labmate/conftest.py:1Low confidence
Executable script in prose of a file that runscapstone-labmate/run.py:1Low confidence
Executable script in prose of a file that runscapstone-labmate/scripts/_capx.py:1Low confidence
Executable script in code of a file that runscapstone-labmate/scripts/draft_report.py:1High confidence
Executable script in prose of a file that runscapstone-labmate/scripts/formula_ast.py:1Low confidence
Executable script in code of a file that runscapstone-labmate/scripts/preconfigure_cap.py:1High confidence
Executable script in code of a file that runscapstone-labmate/scripts/process_cap.py:1High confidence
Executable script in prose of a testcapstone-labmate/tests/test_capx.py:1Low confidence
Executable script in prose of a testcapstone-labmate/tests/test_draft_report.py:1Low confidence
Executable script in prose of a testcapstone-labmate/tests/test_preconfigure_cap.py:1Low confidence
Executable script in prose of a testcapstone-labmate/tests/test_process_cap.py:1Low confidence
Network access in prose of documentationconflict-detector/CHANGELOG.md:3Low confidence
Network access in prose of documentationconflict-detector/CHANGELOG.md:4Low confidence
Network access in prose of documentationconflict-detector/CHANGELOG.md:5Low confidence
Executable script in prose of a file that runsconflict-detector/run.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/__init__.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/cli.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/config.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/detect.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/detector.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/extract.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/normalize.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/report.py:1Low confidence
Executable script in prose of a file that runsconflict-detector/src/rules.py:1Low confidence
Executable script in prose of a testconflict-detector/tests/__init__.py:1Low confidence
Executable script in prose of a testconflict-detector/tests/conftest.py:1Low confidence
Executable script in prose of a testconflict-detector/tests/test_cli.py:1Low confidence
Executable script in prose of a testconflict-detector/tests/test_detect.py:1Low confidence
Executable script in prose of a testconflict-detector/tests/test_detector.py:1Low confidence
Executable script in prose of a file that runsdata-profiler/run.py:1Low confidence
Network access in prose of documentationdocument-evolution-tracker/CHANGELOG.md:3Low confidence
Network access in prose of documentationdocument-evolution-tracker/CHANGELOG.md:4Low confidence
Network access in prose of documentationdocument-evolution-tracker/CHANGELOG.md:5Low confidence
Executable script in prose of a file that runsdocument-evolution-tracker/run.py:1Low confidence
Executable script in prose of a file that runsdocument-evolution-tracker/src/__init__.py:1Low confidence
Executable script in prose of a file that runsdocument-evolution-tracker/src/align.py:1Low confidence
Executable script in prose of a file that runsdocument-evolution-tracker/src/cli.py:1Low confidence
Executable script in prose of a file that runsdocument-evolution-tracker/src/config.py:1Low confidence
Executable script in prose of a file that runsdocument-evolution-tracker/src/diff_blocks.py:1Low confidence
Executable script in prose of a file that runsdocument-evolution-tracker/src/lineage.py:1Low confidence

and 230 more

Works with

Agent compatibility, from the files in this repository
Agent	Status	Evidence	Install to
Claude Code	Native	Manifest .claude-plugin/marketplace.json	`.claude/skills/<skill-name>/`
Codex	Native	Manifest AGENTS.md	`.agents/skills/<skill-name>/`
Cursor	Native	Path .cursor/rules/chelate-shell.mdc	`.cursor/skills/<skill-name>/`
Gemini CLI	Compatible	Standard SKILL.md skills/ai-trace-remover/SKILL.md	`.gemini/skills/<skill-name>/`
GitHub Copilot	Native	Manifest .github/copilot-instructions.md	`.github/skills/<skill-name>/`
OpenCode	Compatible	Standard SKILL.md skills/ai-trace-remover/SKILL.md	`.opencode/skills/<skill-name>/`

Native The repository ships a manifest, folder or frontmatter field for this agent.
Compatible A standard SKILL.md that this agent can read.
Unknown No evidence either way.

Derived automatically from paths, manifests and frontmatter. Not tested on each agent.