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genotex-benchmark-guide
Benchmark for LLM agents on gene expression data analysis
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# GenoTEX Benchmark Guide
## Overview
GenoTEX is a benchmark for evaluating LLM-based agents on gene expression data analysis tasks. It provides curated datasets from GEO (Gene Expression Omnibus) with ground-truth analysis pipelines, testing agents on data preprocessing, differential expression, enrichment analysis, and biological interpretation. Published at MLCB 2025 as an oral presentation.
## Benchmark Structure
```
GenoTEX Benchmark
├── Data Collection
│ └── Curated GEO datasets with ground truth
├── Task Categories
│ ├── Data preprocessing (QC, normalization)