Individual skill
gget
gget CLI and Python workflow for quick genomic database queries, sequence lookup, BLAST-style searches, enrichment checks, and reproducible bioinformatics evidence logs.
auc/skill_library/bundled/gget/SKILL.md
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# gget
Use this skill when a task needs quick bioinformatics lookup across genomic
reference databases with the `gget` CLI or Python package.
## When to Use
- Finding Ensembl IDs, gene metadata, transcript details, or sequences.
- Running quick BLAST or BLAT lookups without building a full local pipeline.
- Fetching reference genome links and annotations from Ensembl.
- Querying protein structure, pathway, cancer, expression, or disease-association
modules through a single interface.
- Creating a reproducible first-pass evidence log before moving to heavier
tools such as Biopython, Snakemake, Nextflow, BLAST+, or database-specific
clients.