Individual skill

uniprot-database

Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.

backend/cli/skills/databases/uniprot-database/SKILL.md

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Last checked: Nov 2, 2026

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Repository stars (not skill ratings): 4,353
Repository last updated: Nov 6, 2026
License: Apache-2.0

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SKILL.mdcore · 7,079 bytes
SKILL.mdcore · 7,079 bytes
references/api_examples.mddoc · 10,348 bytes
references/api_fields.mddoc · 7,729 bytes
references/id_mapping_databases.mddoc · 6,682 bytes
references/query_syntax.mddoc · 6,833 bytes
scripts/uniprot_client.pyruns · 9,982 bytes

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# UniProt Database

## Overview

UniProt is the world's leading comprehensive protein sequence and functional information resource. Search proteins by name, gene, or accession, retrieve sequences in FASTA format, perform ID mapping across databases, access Swiss-Prot/TrEMBL annotations via REST API for protein analysis.

## When to Use This Skill

This skill should be used when:
- Searching for protein entries by name, gene symbol, accession, or organism
- Retrieving protein sequences in FASTA or other formats
- Mapping identifiers between UniProt and external databases (Ensembl, RefSeq, PDB, etc.)
- Accessing protein annotations including GO terms, domains, and functional descriptions
- Batch retrieving multiple protein entries efficiently