Individual skill

clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.

backend/cli/skills/biology/clinical-decision-support/SKILL.md

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Last checked: Nov 2, 2026

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Repository stars (not skill ratings): 4,353
Repository last updated: Nov 6, 2026
License: Apache-2.0

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Browse files

README.mddoc · 5,021 bytes
SKILL.mdcore · 26,809 bytes
SKILL.mdcore · 26,809 bytes
assets/biomarker_report_template.texasset · 13,326 bytes
assets/clinical_pathway_template.texasset · 8,325 bytes
assets/cohort_analysis_template.texasset · 12,601 bytes
assets/color_schemes.texasset · 7,029 bytes
assets/example_gbm_cohort.mddoc · 9,316 bytes
assets/recommendation_strength_guide.mddoc · 11,322 bytes
assets/treatment_recommendation_template.texasset · 18,843 bytes
references/biomarker_classification.mddoc · 29,270 bytes
references/clinical_decision_algorithms.mddoc · 21,393 bytes
references/evidence_synthesis.mddoc · 33,342 bytes
references/outcome_analysis.mddoc · 24,628 bytes
references/patient_cohort_analysis.mddoc · 16,551 bytes
references/treatment_recommendations.mddoc · 19,647 bytes
scripts/biomarker_classifier.pyruns · 12,810 bytes
scripts/build_decision_tree.pyruns · 14,942 bytes
scripts/create_cohort_tables.pyruns · 17,402 bytes
scripts/generate_survival_analysis.pyruns · 14,915 bytes
scripts/validate_cds_document.pyruns · 12,139 bytes

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# Clinical Decision Support Documents

## Description

Generate professional clinical decision support (CDS) documents for pharmaceutical companies, clinical researchers, and medical decision-makers. This skill specializes in analytical, evidence-based documents that inform treatment strategies and drug development:

1. **Patient Cohort Analysis** - Biomarker-stratified group analyses with statistical outcome comparisons
2. **Treatment Recommendation Reports** - Evidence-based clinical guidelines with GRADE grading and decision algorithms

All documents are generated as publication-ready LaTeX/PDF files optimized for pharmaceutical research, regulatory submissions, and clinical guideline development.

**Note:** For individual patient treatment plans at the bedside, use the `treatment-plans` skill instead. This skill focuses on group-level analyses and evidence synthesis for pharmaceutical/research settings.

**Writing Style:** For publication-ready documents targeting medical journals, consult the **venue-templates** skill's `medical_journal_styles.md` for guidance on structured abstracts, evidence language, and CONSORT/STROBE compliance.