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clinical-imaging

Clinical and physiological imaging analysis. Diffusion MRI ADC maps, micro-CT bone morphometry, hemodynamic parameter analysis, circadian rhythm cosinor analysis, ciliary beat frequency (FFT), and tissue deformation optical flow. For DICOM file handling use pydicom; for biosignals use neurokit2.

backend/cli/skills/biology/clinical-imaging/SKILL.md

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# Clinical Imaging: Clinical & Physiological Imaging Analysis

## Overview

Clinical Imaging provides computational tools for analyzing clinical and physiological imaging data. This skill covers diffusion MRI apparent diffusion coefficient (ADC) map computation, micro-CT bone morphometry (BV/TV, trabecular thickness), hemodynamic parameter analysis from blood pressure waveforms, circadian rhythm cosinor analysis, ciliary beat frequency measurement via FFT, tissue deformation analysis using optical flow, and amyloid plaque quantification from fluorescence microscopy.

## When to Use This Skill

- Computing ADC maps from multi-b-value diffusion MRI data
- Analyzing bone microarchitecture from micro-CT volumes
- Processing blood pressure or hemodynamic waveform data
- Fitting circadian rhythm data with cosinor models
- Measuring ciliary beat frequency from high-speed video
- Quantifying tissue deformation from image sequences