Individual skill

bionemo-nims

Run NVIDIA BioNeMo NIMs through the hosted scientific_capability tool with your own NVIDIA API key. Boltz-2 and OpenFold2/OpenFold3 structure prediction, MSA Search alignments, DiffDock docking, ProteinMPNN sequence design, RFdiffusion backbones, GenMol and MolMIM molecule generation, Evo 2 genomic sequence modeling. Use when a request names one of these models, "BioNeMo", "NIM", or asks for a hosted structure, docking or design prediction; not for self-hosted containers on Modal (see protein-binder-design).

backend/cli/skills/biology/bionemo-nims/SKILL.md

Read pinned source

Source commit a08e0ad0ad3d6448123039ee4659163eb2e35d99

What was checked

Matches the observed repository HEAD: Yes
Scanner rules are current: Yes
Repository scan complete: No
Skill scan complete: Yes
Observed behavior: Instructions only
Last checked: Nov 2, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

Install this skill

Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.

An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.

Repository context

Repository stars (not skill ratings): 4,352
Repository last updated: Nov 6, 2026
License: Apache-2.0

Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.

agent Repository topic
ai Repository topic
bun Repository topic
cli Repository topic
llm Repository topic
ml Repository topic
open-source Repository topic
research Repository topic
science Repository topic
ai-agent Repository topic
bionemo Declared skill tag
nvidia Declared skill tag
structure-prediction Declared skill tag
docking Declared skill tag
protein-design Declared skill tag
design Derived category
devops Derived category
devops-containers Derived category

Files and excerpt

File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.

Browse files

SKILL.mdcore · 4,244 bytes

Read excerpt


# NVIDIA BioNeMo NIMs (hosted)

The ten BioNeMo NIM adapters run against NVIDIA's hosted endpoints with the user's own
NVIDIA API key. Every request goes through the `scientific_capability` tool; nothing here
installs software or starts compute. The capability ids are `boltz2`, `openfold2`,
`openfold3`, `msa-search`, `diffdock`, `proteinmpnn`, `rfdiffusion`, `genmol`, `molmim`
and `evo2`.

## Before the first request

- `scientific_capability` with `action: "list"` shows the catalog and each entry's maturity.
  `action: "doctor", id: "<id>"` says whether the NVIDIA key is connected and the endpoint
  is reachable. Without a key, stop and tell the user: connect one under
  **Customize → Connectors → NVIDIA API** (an `nvapi-…` key from build.nvidia.com); requests