Individual skill
proteinmpnn-nim
Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Sends user-provided PDB files and design parameters to NVIDIA's hosted API, authenticated with an environment API key, or to a user-selected local NIM. Use for sequence design, backbone redesign, fixed chains and residues, omit_AAs, sampling temperature, soluble model, local Docker, and multi-FASTA output.
skills/bionemo-proteinmpnn-nim/SKILL.md
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BENCHMARK.mddoc · 7,095 bytesSKILL.mdcore · 7,992 bytesSKILL.mdcore · 7,992 bytesSKILL.mdcore · 7,992 bytesconfig/skillspector-baseline.ymlasset · 1,569 bytesevals/README.mddoc · 1,259 bytesevals/config.ymlasset · 472 bytesevals/evals.jsonasset · 6,432 bytesevals/files/1R42.pdbasset · 504,711 bytesevals/harbor/dataset.tomlasset · 159 bytesevals/harbor/proteinmpnn-local-design/environment/Dockerfileruns · 287 bytesevals/harbor/proteinmpnn-local-design/environment/input/1R42.pdbasset · 504,711 bytesevals/harbor/proteinmpnn-local-design/instruction.mddoc · 997 bytesevals/harbor/proteinmpnn-local-design/task.tomlasset · 650 bytesevals/harbor/proteinmpnn-local-design/tests/grader.pyruns · 11,450 bytesevals/harbor/proteinmpnn-local-design/tests/test.shruns · 104 bytesevals/trigger_evals.jsonasset · 2,372 bytesreferences/api.mddoc · 7,150 bytesreferences/examples.mddoc · 2,414 bytesreferences/parameters.mddoc · 1,158 bytesreferences/science.mddoc · 1,125 bytesreferences/validation.mddoc · 1,552 bytesscripts/design.pyruns · 10,154 bytesskill-card.mddoc · 4,292 bytesskill.oms.sigasset · 9,037 bytes
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# ProteinMPNN NIM
<!-- nv-carps: dummy edit to trigger NIM skill validation. -->
Design protein sequences for a supplied backbone PDB. Use this guide for
first-pass hosted/local usage; load supplemental files only when needed:
- `references/api.md`: exact endpoints, schemas, Docker flags, response fields.
- `references/science.md`: inverse-folding uses, limits, and validation.
- `references/parameters.md`: design controls, fixed positions, sampling.
- `references/validation.md`: FASTA, score, and structure checks.
- `references/examples.md`: compact hosted/local request patterns.
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