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candidate-ranking

Rank peptide variants using stability heuristics and hotspot protection; emit top candidates.

skills/candidate-ranking/SKILL.md

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# Candidate Ranking

Ranks candidates based on a simple weighted score:
- stability_score (heuristic)
- penalty for hotspot mutations if hotspot positions provided
- penalty for edit distance vs reference sequence if provided

## CLI
```bash
python3 scripts/run.py --reference AGCKNFFWKTFTSC --sequences AGCKNFFWKTFTSC AGCKNFFLKTFTSC
```