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metabolism-init

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    # Metabolism Initialization Skill Overview

This skill enables **knowledge metabolism initialization** for research topics through a structured Day 0 baseline-building process.

## Key Components

**Configuration Setup**: The system checks for `metabolism/config.json` and creates it if absent, capturing research direction, keywords, categories, and processing history.

**Directory Structure**: Establishes organized workspace with subdirectories for knowledge, hypotheses, experiments, conversations, and logging.

**Three-Phase Workflow**:

1. **Broad Literature Survey** — Delegates to `/research-collect` to gather foundational and recent works without date restrictions, generating metadata and downloads

2. **Paper Analysis** — Extracts core methodologies and conclusions from TeX sources or PDFs, tracking processed IDs to avoid duplication