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protein-interactions

ToolUniverse workflow — Protein Interactions

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---
name: Protein Interaction Network Analysis
description: Analyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. Maps protein identifiers, retrieves interaction networks with confidence scores, performs functional enrichment analysis (GO/KEGG/Reactome), and optionally includes structural data. No API key required for core functionality (STRING). Use when analyzing protein networks, discovering interaction partners, identifying functional modules, or studying protein complexes.
---

# Protein Interaction Network Analysis

Comprehensive protein interaction network analysis using ToolUniverse tools. Analyzes protein networks through a 4-phase workflow: identifier mapping, network retrieval, enrichment analysis, and optional structural data.

## Features

✅ **Identifier Mapping** - Convert protein names to database IDs (STRING, UniProt, Ensembl)
✅ **Network Retrieval** - Get interaction networks with confidence scores (0-1.0)
✅ **Functional Enrichment** - GO terms, KEGG pathways, Reactome pathways