Individual skill
opentrons-integration
Author, review, migrate, simulate, and troubleshoot official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for robot-specific liquid handling, deck and labware setup, pipettes, modules, runtime parameters, liquid classes, and Opentrons App analysis. Use pylabrobot instead when one workflow must support multiple robot vendors.
plugins/KalarisLabs/research-agent-skills/skills/opentrons-integration/SKILL.md
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- Last checked
- Nov 4, 2026
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- 1,532
- Repository last updated
- Nov 6, 2026
- License
- Apache-2.0
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SKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesSKILL.mdcore · 13,355 bytesreferences/api_reference.mddoc · 11,827 bytesreferences/liquid_handling.mddoc · 11,121 bytesreferences/migration-api-2-19-to-2-29.mddoc · 8,321 bytesreferences/modules_and_deck.mddoc · 11,018 bytesreferences/protocol_authoring.mddoc · 11,314 bytesreferences/sources.mddoc · 7,731 bytesreferences/validation_and_operations.mddoc · 9,849 bytesrequirements-flex.txtdoc · 17 bytesrequirements-ot2.txtdoc · 17 bytesscripts/absorbance_reader_template.pyruns · 2,329 bytesscripts/basic_protocol_template.pyruns · 1,851 bytesscripts/ot2_basic_protocol_template.pyruns · 1,706 bytesscripts/pcr_setup_template.pyruns · 4,440 bytesscripts/runtime_parameters_template.pyruns · 3,197 bytesscripts/serial_dilution_template.pyruns · 3,229 bytes
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# Opentrons Integration
## Overview
Create production-minded Python Protocol API v2 protocols for Opentrons Flex and
OT-2. This skill covers protocol structure, hardware and deck configuration,
liquid handling, runtime customization, module control, simulation, and safe
deployment.
The verified baseline as of **2026-07-23** is:
- `opentrons==9.1.1` for reproducible Flex simulation.
- `opentrons==9.0.0` for local OT-2 API 2.28 compatibility simulation.
- Flex supports API levels 2.15 through 2.29 on current software.