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gtars

Inspects and plans work with Gtars, the Rust/Python/CLI toolkit for genomic intervals: BED RegionSet set algebra (reduce, setdiff, intersect, closest, cluster, gaps), overlap counts, consensus peak sets, coverage, tokenizers, fragment processing, and refget/BEDbase stores. Use when merging or comparing BED interval sets, building a consensus or universe from peaks, tokenizing regions for ML models, working with fragment files, or planning refget sequence-collection and BEDbase cache use. Use when checking BED coordinates, contigs, or strand before running gtars. Not for general BAM/VCF processing; use samtools or bedtools for that.

plugins/KalarisLabs/research-agent-skills/skills/gtars/SKILL.md

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Nov 6, 2026
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# Gtars

Gtars provides native Rust implementations, Python bindings, and a feature-gated
`gtars` binary for genomic interval and reference-sequence work. Start with the
bundled local inspectors; call upstream code only after the data contract,
provenance, resource bounds, and side effects are explicit.

## Verified snapshot (2026-07-23)

- Python: [`gtars==0.9.2`](https://pypi.org/project/gtars/), released
  2026-06-17, `Requires-Python >=3.10`.
- Rust meta-crate: [`gtars=0.9.0`](https://crates.io/crates/gtars), released
  2026-06-15. Its default feature set is empty.
- CLI crate/binary: [`gtars-cli=0.9.0`](https://crates.io/crates/gtars-cli);