Individual skill
protocolsio-integration
Reads, validates, and exports protocols.io data using the documented REST v3/v4 endpoints and the official MCP endpoint, and builds non-executing mutation plans. The bundled client makes bounded GET requests to official hosts only with --execute, and also validates saved protocol JSON offline for step order, version, DOI, and attribution metadata. Use when fetching a protocol, its steps, materials, or PDF from protocols.io by exact version. Use when validating a saved protocol snapshot for provenance before reuse. Use when planning a protocol create, update, publish, upload, or organization export without running it. Use when checking protocols.io rate limits, pagination, or authentication. Do not use for other protocol repositories or general literature search.
plugins/KalarisLabs/research-agent-skills/skills/protocolsio-integration/SKILL.md
Source commit d780783eba4ecc7c8b9429f95c9362df95f07c61
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 4, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 1,533
- Repository last updated
- Nov 6, 2026
- License
- Apache-2.0
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-coding Repository topic
- awesome Repository topic
- awesome-list Repository topic
- codex Repository topic
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- openai Repository topic
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- protocols.io,-lab-protocols,-reproducibility,-methods Declared skill tag
- data Derived category
- security Derived category
- research Derived category
Files and excerpt
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Browse files
SKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesSKILL.mdcore · 11,799 bytesassets/protocol-snapshot.schema.jsonasset · 3,621 bytesreferences/additional_features.mddoc · 8,214 bytesreferences/authentication.mddoc · 6,296 bytesreferences/discussions.mddoc · 6,562 bytesreferences/file_manager.mddoc · 9,607 bytesreferences/protocols_api.mddoc · 10,091 bytesreferences/workspaces.mddoc · 7,429 bytesscripts/__init__.pyruns · 76 bytesscripts/_common.pyruns · 20,217 bytesscripts/pagination_helper.pyruns · 7,665 bytesscripts/plan_write_request.pyruns · 21,735 bytesscripts/protocols_read.pyruns · 15,573 bytesscripts/validate_auth_config.pyruns · 3,529 bytesscripts/validate_protocol_json.pyruns · 12,311 bytes
Read excerpt
# protocols.io Integration
Use the exact endpoint version documented for each operation. The official API
landing page is still titled “API v3,” but its maintained sections mix **v3**
and **v4**. There is no single safe `/api/v3` base to apply to every resource.
This skill was refreshed against official sources on **2026-07-23**.
## Operating Contract
1. **Start offline.** Validate credentials/configuration, saved JSON, pagination,
or a write plan before making a request.
2. **Require `--execute` for network reads.** Bundled write tooling has no
execution mode.
3. **Read only named variables.** Never inspect the full environment, search