Individual skill
umap-learn
Reduces and embeds high-dimensional data with umap-learn (UMAP) in Python, including 2D/3D visualization, supervised and semi-supervised UMAP, DensMAP, AlignedUMAP, Parametric UMAP (Keras), transform() on new data, and inverse transforms. Use when visualizing high-dimensional data as a 2D or 3D embedding, preprocessing features for HDBSCAN clustering, using partial labels to guide an embedding, aligning embeddings across time points or batches, or projecting unseen samples into a trained embedding. Tune n_neighbors, min_dist, n_components, and metric. Not for linear PCA or t-SNE-specific workflows.
plugins/KalarisLabs/research-agent-skills/skills/umap-learn/SKILL.md
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- Last checked
- Nov 4, 2026
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- Nov 6, 2026
- License
- Apache-2.0
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# UMAP-Learn
## Overview
UMAP (Uniform Manifold Approximation and Projection) is a dimensionality reduction technique for visualization and general non-linear dimensionality reduction. Apply this skill for fast, scalable embeddings that preserve local and global structure, supervised learning, and clustering preprocessing.
## Quick Start
### Installation
Current stable release: **umap-learn 0.5.12** (released April 2026). Requires Python 3.9+ and depends on `scikit-learn>=1.6`, `numba`, `pynndescent`, `numpy`, and `scipy`. Pin to a verified release:
```bash
uv pip install umap-learn==0.5.12