Individual skill
pubchem-database
Query PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics. Use when a user asks about a specific chemical, drug, or molecule.
skills/pubchem_database/SKILL.md
Source commit 4de6786171f1479026da5d3a00f110703c8ba35e
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- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 2, 2026
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Repository context
- Repository stars (not skill ratings)
- 3,426
- Repository last updated
- Oct 23, 2026
- License
- Apache-2.0
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- data Derived category
- data-databases Derived category
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Read excerpt
# PubChem Database
## Prerequisites
1. **`uv`**: Read the `uv` skill and follow its Setup instructions to ensure
`uv` is installed and on PATH.
2. **User Notification**: If .licenses/pubchem_database_LICENSE.txt does not
already exist in the workspace root directory then (1) prominently notify
the user to check the terms at
https://pubchem.ncbi.nlm.nih.gov/docs/citation-guidelines and
https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest, then (2) create the file
recording the notification text and timestamp.
## Quick Start