Individual skill

biopython

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

tests/ext_conformance/artifacts/templates-davila7/cli-tool/components/skills/scientific/biopython/SKILL.md

Source commit 70110103476bad94b3d700f50909d08842df50cc

What was checked

Matches the observed repository HEAD

Yes

Scanner rules are current

Yes

Repository scan complete

No

Skill scan complete

No

Observed behavior

Network or broad shell

Last checked

Nov 3, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

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