Individual skill
matchms
Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.
cli-tool/components/skills/scientific/matchms/SKILL.md
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# Matchms
## Overview
Matchms is an open-source Python library for mass spectrometry data processing and analysis. Import spectra from various formats, standardize metadata, filter peaks, calculate spectral similarities, and build reproducible analytical workflows.
## Core Capabilities
### 1. Importing and Exporting Mass Spectrometry Data
Load spectra from multiple file formats and export processed data:
```python
from matchms.importing import load_from_mgf, load_from_mzml, load_from_msp, load_from_json