Individual skill
dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
cli-tool/components/skills/scientific/dnanexus-integration/SKILL.md
Source commit ad81bf053f80b626801decf425f501ba49983d98
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 4, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 33,193
- Repository last updated
- Nov 7, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- anthropic Repository topic
- anthropic-claude Repository topic
- claude Repository topic
- claude-code Repository topic
- agent-skills Repository topic
- ai-agents Repository topic
- claude-code-plugins Repository topic
- cli Repository topic
- mcp Repository topic
- registry Repository topic
- data Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesSKILL.mdcore · 10,550 bytesreferences/app-development.mddoc · 5,291 bytesreferences/configuration.mddoc · 13,172 bytesreferences/data-operations.mddoc · 8,120 bytesreferences/job-execution.mddoc · 8,766 bytesreferences/python-sdk.mddoc · 9,776 bytes
Read excerpt
# DNAnexus Integration
## Overview
DNAnexus is a cloud platform for biomedical data analysis and genomics. Build and deploy apps/applets, manage data objects, run workflows, and use the dxpy Python SDK for genomics pipeline development and execution.
## When to Use This Skill
This skill should be used when:
- Creating, building, or modifying DNAnexus apps/applets
- Uploading, downloading, searching, or organizing files and records
- Running analyses, monitoring jobs, creating workflows
- Writing scripts using dxpy to interact with the platform
- Setting up dxapp.json, managing dependencies, using Docker