Individual skill

igv-validator

Read-level validation of variant calls from any VCF, tumor/normal or tumor-only: counts read support in the BAMs (SNVs, indels, SV breakpoints), compares it with the caller's reported counts, flags artifact patterns, takes one IGV screenshot per variant and writes a report.

skills/igv-validator/SKILL.md

Source commit df1d8ffe9facdba2b89f608569fea9daaa1fc92f

What was checked

Matches the observed repository HEAD

Yes

Scanner rules are current

Yes

Repository scan complete

No

Skill scan complete

No

Observed behavior

Network or broad shell

Last checked

Nov 3, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

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