Individual skill

gwas-sumstats-harmonize

Harmonize GWAS summary statistics from any common format (GWAS-Catalog SSF, PLINK 1.9/2, REGENIE, METAL, BOLT, SAIGE) to one canonical table (SNP CHR BP EA NEA EAF BETA SE P N): column detection, BETA/SE/P derivation, QC with drop reasons, and allele alignment to a reference panel, run as a Snakemake workflow.

skills/gwas-sumstats-harmonize/SKILL.md

Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d

What was checked

Matches the observed repository HEAD

Yes

Scanner rules are current

Yes

Repository scan complete

No

Skill scan complete

No

Observed behavior

Network or broad shell

Last checked

Nov 8, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

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