Individual skill
eqtl-catalogue-region-fetch
Fetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. Use when an agent needs eQTL beta / SE / p-value for every variant in a window around a gene's TSS for one specific dataset (study × tissue × quantification method). Input: dataset_id, chromosome, start, end, optional molecular_trait_id. Output: harmonised TSV slice.
skills/eqtl-catalogue-region-fetch/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
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- Observed behavior
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- Last checked
- Nov 8, 2026
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Repository context
- Repository stars (not skill ratings)
- 1,175
- Repository last updated
- Nov 7, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- eqtl Declared skill tag
- eqtl-catalogue Declared skill tag
- region-fetch Declared skill tag
- tabix Declared skill tag
- summary-statistics Declared skill tag
- cis-eqtl Declared skill tag
- data Derived category
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Browse files
.gitignoreasset · 245 bytesLICENSEasset · 1,067 bytesSKILL.mdcore · 21,216 bytesSKILL.mdcore · 21,216 bytesSKILL.mdcore · 21,216 bytesSKILL.mdcore · 21,216 bytesSKILL.mdcore · 21,216 bytesdata/dataset_index_r7.provenance.jsonasset · 5,381 bytesdata/dataset_index_r7.tsvasset · 66,786 bytesenvironment.ymlasset · 166 byteseqtl_catalogue_region_fetch.pyruns · 50,164 bytesexamples/default.jsonasset · 310 bytesexamples/expected_output.mddoc · 1,686 bytesexamples/il6r_gtex_small_intestine.jsonasset · 346 bytesexamples/input.jsonasset · 144 bytesexamples/irf5_gtex_adipose_visceral.jsonasset · 287 bytesexamples/run_example.shruns · 1,071 bytesexamples/sort1_gtex_minor_salivary_gland.jsonasset · 310 bytestests/conftest.pyruns · 659 bytestests/test_eqtl_catalogue_region_fetch.pyruns · 39,197 bytestests/test_live_eqtl_catalogue_region_fetch.pyruns · 3,481 bytes
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